Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

31785048 .. 31791206

Gene Structure 6159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCGGGCCTCGTTCCTCCTCCACCCACTGCTCCTGATACTCCCAAACAGAATGAGAGAGTCGATTACCTCAATCTTCCTTGCCCTATTCCCTACGACGAGATCTCCCGCGAAGCTTACAGTCAGTCCCTCTCTCACTCTCACTCTCACTCTCACTCTGTGATTGGTTATATGCTTCCTGCCTTGCTCTGTATATCTGTGGAAAATCTACTATTTGTTCTCGGATGTTTCTTGTCTTTAAAGCCGGAGCTTTTCGAGGGGATGCGAATCGATTTTACCAAAGGTCTCAATCAGAAGTTCTCACTCAGTCACAGTGTGACCATGGGACCTACAGAGGTTCCTTCCCAATCTACTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGGCTCAATGCGAGAGTAAAGTGTGATTTAACCGAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCCAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGGTCTTCCCCTGGTTCTCCATGATGCTACTATACCAAGATGGAAAGGCACAAAAGTAGCTTTAAAGAGCAGAGGCATGGATCTGGAGGTGTTGCGGGATAGGGTTGTTTACTGCTTTTCTTGTGTGCTTCGATTTCTGGTTCTTATCTTGGCTGTGGTTGCCACAGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGTGTCGTCTTAGAGGAAAGATTGATTCCAATGGTGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCCGCAGAGATTGATCATAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

396

Amino Acids

43.85

Weight (kDa)

8.54

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	84 - 389	3.3e-55	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1041
Acc36I	ACCTGC	1 cut(s)	889
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	5, 109, 823, 1128
AclWI	GGATC	1 cut(s)	816
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	366, 1160
AdeI	CACNNNGTG	2 cut(s)	160, 316
AfaI	GTAC	2 cut(s)	910, 980
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	2 cut(s)	496, 587
AjiI	CACGTC	1 cut(s)	1000
AjnI	CCWGG	1 cut(s)	738
AluBI	AGCT	9 cut(s)	116, 250, 415, 511, 788, 930, 1007, 1011, 1076
AluI	AGCT	9 cut(s)	116, 250, 415, 511, 788, 930, 1007, 1011, 1076
Alw26I	GTCTC	2 cut(s)	290, 990
AlwI	GGATC	1 cut(s)	816
AoxI	GGCC	2 cut(s)	7, 543
ApeKI	GCWGC	3 cut(s)	704, 1076, 1079
ApoI	RAATTY	2 cut(s)	366, 1160
ArsI	GACNNNNNNTTYG	2 cut(s)	1145, 1177
AspS9I	GGNCC	3 cut(s)	7, 326, 406
AsuHPI	GGTGA	1 cut(s)	668
AsuNHI	GCTAGC	1 cut(s)	1007
AvaII	GGWCC	2 cut(s)	326, 406
BalI	TGGCCA	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	725
BbvI	GCAGC	3 cut(s)	691, 1063, 1066
BccI	CCATC	3 cut(s)	437, 721, 762
BciT130I	CCWGG	1 cut(s)	740
BclI	TGATCA	1 cut(s)	1138
BcoDI	GTCTC	2 cut(s)	290, 990
BfaI	CTAG	4 cut(s)	590, 906, 962, 1008
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	889
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	3 cut(s)	705, 1077, 1080
BlsI	GCNGC	3 cut(s)	706, 1078, 1081
BmcAI	AGTACT	1 cut(s)	910
Bme1390I	CCNGG	1 cut(s)	740
Bme18I	GGWCC	2 cut(s)	326, 406
BmgBI	CACGTC	1 cut(s)	1000
BmgT120I	GGNCC	3 cut(s)	7, 326, 406
BmiI	GGNNCC	4 cut(s)	327, 339, 394, 408
BmrFI	CCNGG	1 cut(s)	740
BmsI	GCATC	5 cut(s)	252, 408, 688, 742, 974
BmtI	GCTAGC	1 cut(s)	1011
BpiI	GAAGAC	1 cut(s)	725
BpmI	CTGGAG	2 cut(s)	833, 933
Bsa29I	ATCGAT	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	321, 648, 738
BsaWI	WCCGGW	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	2 cut(s)	546, 916
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	740
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	321, 648, 738
BseGI	GGATG	2 cut(s)	230, 267
BseJI	GATNNNNATC	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	319, 392, 521
BseNI	ACTGG	2 cut(s)	546, 916
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	691, 1063, 1066
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	9, 545
BshNI	GGYRCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	245, 574
BslFI	GGGAC	2 cut(s)	112, 339
BsmAI	GTCTC	2 cut(s)	290, 990
BsmBI	CGTCTC	1 cut(s)	990
BsmFI	GGGAC	2 cut(s)	112, 339
BsnI	GGCC	2 cut(s)	9, 545
Bso31I	GGTCTC	1 cut(s)	290
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	3 cut(s)	102, 808, 1138
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	4 cut(s)	5, 109, 823, 1128
BspANI	GGCC	2 cut(s)	9, 545
BspCNI	CTCAG	3 cut(s)	318, 391, 520
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	327, 339, 394, 408
BspMI	ACCTGC	1 cut(s)	889
BspOI	GCTAGC	1 cut(s)	1011
BspPI	GGATC	1 cut(s)	816
BspQI	GCTCTTC	1 cut(s)	1086
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	2 cut(s)	546, 916
BssECI	CCNNGG	3 cut(s)	321, 648, 738
BssMI	GATC	3 cut(s)	102, 808, 1138
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	5 cut(s)	122, 314, 582, 1038, 1180
Bst6I	CTCTTC	1 cut(s)	1086
BstAUI	TGTACA	1 cut(s)	978
BstC8I	GCNNGC	2 cut(s)	7, 1009
BstDEI	CTNAG	4 cut(s)	305, 378, 507, 1046
BstDSI	CCRYGG	2 cut(s)	321, 648
BstF5I	GGATG	2 cut(s)	230, 267
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	105, 811, 1141
BstMAI	GTCTC	2 cut(s)	290, 990
BstMBI	GATC	3 cut(s)	102, 808, 1138
BstMWI	GCNNNNNNNGC	1 cut(s)	887
BstNI	CCWGG	1 cut(s)	740
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	738
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	691, 1063, 1066
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	2 cut(s)	102, 808
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	102, 808
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	9, 545
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	2 cut(s)	321, 648
BtrI	CACGTC	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	230, 267
BtsI	GCAGTG	2 cut(s)	27, 372
BtsIMutI	CAGTG	4 cut(s)	27, 319, 372, 1043
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	2 cut(s)	7, 1009
Cfr13I	GGNCC	3 cut(s)	7, 326, 406
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	909, 979
CviAII	CATG	7 cut(s)	322, 529, 536, 541, 749, 805, 976
CviQI	GTAC	2 cut(s)	909, 979
DdeI	CTNAG	4 cut(s)	305, 378, 507, 1046
DpnI	GATC	3 cut(s)	104, 810, 1140
DpnII	GATC	3 cut(s)	102, 808, 1138
DraI	TTTAAA	2 cut(s)	240, 792
DraIII	CACNNNGTG	2 cut(s)	160, 316
DrdI	GACNNNNNNGTC	1 cut(s)	1041
DseDI	GACNNNNNNGTC	1 cut(s)	1041
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	1086
EarI	CTCTTC	1 cut(s)	1086
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	326, 406
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	990
FaeI	CATG	7 cut(s)	325, 532, 539, 544, 752, 808, 979
FaqI	GGGAC	2 cut(s)	112, 339
FatI	CATG	7 cut(s)	321, 528, 535, 540, 748, 804, 975
FauI	CCCGC	2 cut(s)	116, 816
FbaI	TGATCA	1 cut(s)	1138
Fnu4HI	GCNGC	3 cut(s)	705, 1077, 1080
FokI	GGATG	2 cut(s)	237, 274
Fsp4HI	GCNGC	3 cut(s)	705, 1077, 1080
FspBI	CTAG	4 cut(s)	590, 906, 962, 1008
GluI	GCNGC	3 cut(s)	705, 1077, 1080
GsuI	CTGGAG	2 cut(s)	833, 933
HaeIII	GGCC	2 cut(s)	9, 545
HapII	CCGG	2 cut(s)	245, 574
Hin1II	CATG	7 cut(s)	325, 532, 539, 544, 752, 808, 979
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	60, 267, 484, 1061
HpaII	CCGG	2 cut(s)	245, 574
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	7 cut(s)	224, 294, 627, 684, 939, 949, 970
Hpy188III	TCNNGA	4 cut(s)	35, 427, 812, 993
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	351, 490, 934
HpyCH4III	ACNGT	5 cut(s)	122, 314, 582, 1038, 1180
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	2 cut(s)	602, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	887
HpyF3I	CTNAG	4 cut(s)	305, 378, 507, 1046
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	7 cut(s)	325, 532, 539, 544, 752, 808, 979
Ksp22I	TGATCA	1 cut(s)	1138
Kzo9I	GATC	3 cut(s)	102, 808, 1138
LguI	GCTCTTC	1 cut(s)	1086
LmnI	GCTCC	2 cut(s)	37, 247
Lsp1109I	GCAGC	3 cut(s)	691, 1063, 1066
LweI	GCATC	5 cut(s)	252, 408, 688, 742, 974
MaeI	CTAG	4 cut(s)	590, 906, 962, 1008
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	6 cut(s)	308, 316, 531, 576, 631, 1000
MalI	GATC	3 cut(s)	104, 810, 1140
MboI	GATC	3 cut(s)	102, 808, 1138
MboII	GAAGA	3 cut(s)	68, 725, 1103
MflI	RGATCY	2 cut(s)	102, 808
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	5 cut(s)	366, 397, 502, 1114, 1160
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	1162
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	5 cut(s)	239, 363, 476, 791, 1113
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	2 cut(s)	245, 574
MspR9I	CCNGG	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	887
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	102, 808, 1138
NheI	GCTAGC	1 cut(s)	1007
NlaIII	CATG	7 cut(s)	325, 532, 539, 544, 752, 808, 979
NlaIV	GGNNCC	4 cut(s)	327, 339, 394, 408
NmuCI	GTSAC	5 cut(s)	308, 316, 531, 576, 1000
NspI	RCATGY	1 cut(s)	532
PciI	ACATGT	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	1086
PfeI	GAWTC	3 cut(s)	267, 484, 1061
PflFI	GACNNNGTC	1 cut(s)	1038
PkrI	GCNGC	3 cut(s)	706, 1078, 1081
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	4 cut(s)	327, 339, 394, 408
PspPI	GGNCC	3 cut(s)	7, 326, 406
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	102, 808
PsyI	GACNNNGTC	1 cut(s)	1038
RsaI	GTAC	2 cut(s)	910, 980
RsaNI	GTAC	2 cut(s)	909, 979
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	5 cut(s)	239, 363, 476, 791, 1113
SatI	GCNGC	3 cut(s)	705, 1077, 1080
Sau3AI	GATC	3 cut(s)	102, 808, 1138
Sau96I	GGNCC	3 cut(s)	7, 326, 406
ScaI	AGTACT	1 cut(s)	910
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	740
SfaNI	GCATC	5 cut(s)	252, 408, 688, 742, 974
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	326, 406
Sse9I	AATT	5 cut(s)	366, 397, 502, 1114, 1160
SsiI	CCGC	4 cut(s)	5, 109, 823, 1128
SspMI	CTAG	4 cut(s)	590, 906, 962, 1008
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	5 cut(s)	122, 314, 582, 1038, 1180
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	5 cut(s)	63, 255, 270, 709, 859
TasI	AATT	5 cut(s)	366, 397, 502, 1114, 1160
TatI	WGTACW	2 cut(s)	908, 978
TfiI	GAWTC	3 cut(s)	267, 484, 1061
Tru1I	TTAA	5 cut(s)	239, 363, 476, 791, 1113
Tru9I	TTAA	5 cut(s)	239, 363, 476, 791, 1113
TscAI	CASTG	4 cut(s)	34, 319, 379, 1043
TseFI	GTSAC	5 cut(s)	308, 316, 531, 576, 1000
TseI	GCWGC	3 cut(s)	704, 1076, 1079
Tsp45I	GTSAC	5 cut(s)	308, 316, 531, 576, 1000
TspDTI	ATGAA	1 cut(s)	964
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	4 cut(s)	34, 319, 379, 1043
Tth111I	GACNNNGTC	1 cut(s)	1038
VpaK11BI	GGWCC	2 cut(s)	326, 406
XapI	RAATTY	2 cut(s)	366, 1160
XceI	RCATGY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XspI	CTAG	4 cut(s)	590, 906, 962, 1008
ZrmI	AGTACT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.