Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

8941066 .. 8942874

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGGACGACAATAGTAACAACAACAACAACAACAACGTGATCGCACCTTTCATCGTGAAAACATATCAGATGGTCAATGATCCTTCCACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTCGTTGATCCACTCGACTTCTCGCAACGAATCTTACCTGCTTATTTCAAACACAACAATTTCAGCAGTTTTGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGGGAGTTTGCGAACGAGCATTTTCTAAGGGGACAGAAGCATTTGTTGAATAACATAGCGCGTAGGAAACACGCGCGGGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGGGAGATCGAACGGTTAAAAGAAGAGCAGAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCGGAGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTTGAAGATCCTGATCTTCTTCCAAGAATGATGCTCGAGAAAGAACGGACAAAGCAACAACAACAAGTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAAGTCAGAGGAAGAAGAAGTGGAAGAAGATGAAGGGAGGGTCTTTAGGGTTATGTCATCATCAACACCGTCGCCGTCATCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGATTGTTCCTATGACGCAAGGACAGTTTGGTAGTTACGAGACGGGTTTGGTGGCGAAGTCGATGCTCTCGAATTCAACGTCGTCGACGTCATCATCTTTGACGTCGACGTTTTCTTTGCCGGAGAGTGTTAACGGAGGAGGAGGAGGAGGATGTGGGAGTATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGACGTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCATTTTCTCTGTTTCGAGGTGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

330

Amino Acids

37.71

Weight (kDa)

5.82

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	18 - 107	2.4e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	604
AatII	GACGTC	2 cut(s)	812, 827
Acc36I	ACCTGC	2 cut(s)	124, 181
AccB7I	CCANNNNNTGG	1 cut(s)	96
AccI	GTMKAC	3 cut(s)	596, 806, 827
AccII	CGCG	3 cut(s)	316, 329, 331
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	331, 956
AclWI	GGATC	6 cut(s)	77, 137, 239, 252, 449, 497
AcsI	RAATTY	1 cut(s)	793
AcyI	GRCGYC	2 cut(s)	809, 824
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgeI	ACCGGT	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	184, 304, 500, 798
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	454, 755
AlwI	GGATC	6 cut(s)	77, 137, 239, 252, 449, 497
Ama87I	CYCGRG	1 cut(s)	530
Aor13HI	TCCGGA	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	793
ArsI	GACNNNNNNTTYG	4 cut(s)	785, 817, 820, 852
AsiGI	ACCGGT	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	316, 331
AspS9I	GGNCC	2 cut(s)	113, 250
AsuHPI	GGTGA	3 cut(s)	374, 613, 702
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	113, 250
BamHI	GGATCC	1 cut(s)	244
BccI	CCATC	3 cut(s)	67, 469, 710
BceAI	ACGGC	2 cut(s)	661, 927
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BcoDI	GTCTC	2 cut(s)	454, 755
BfaI	CTAG	1 cut(s)	410
BfuAI	ACCTGC	2 cut(s)	124, 181
Bme18I	GGWCC	2 cut(s)	113, 250
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	113, 250
BmiI	GGNNCC	2 cut(s)	114, 246
BmsI	GCATC	2 cut(s)	516, 774
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	809, 824
BsaI	GGTCTC	1 cut(s)	454
BsaWI	WCCGGW	6 cut(s)	247, 252, 435, 463, 699, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	247
BseGI	GGATG	4 cut(s)	342, 435, 721, 878
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseRI	GAGGAG	5 cut(s)	873, 876, 879, 882, 939
Bsh1236I	CGCG	3 cut(s)	316, 329, 331
BshTI	ACCGGT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	7 cut(s)	248, 253, 436, 464, 700, 713, 842
BslFI	GGGAC	2 cut(s)	126, 300
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	454, 755
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	126, 300
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
BspACI	CCGC	2 cut(s)	331, 956
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	3 cut(s)	316, 329, 331
BspLI	GGNNCC	2 cut(s)	114, 246
BspMI	ACCTGC	2 cut(s)	124, 181
BspPI	GGATC	6 cut(s)	77, 137, 239, 252, 449, 497
BspQI	GCTCTTC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	252
BssMI	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
BssNI	GRCGYC	2 cut(s)	809, 824
Bst4CI	ACNGT	7 cut(s)	128, 344, 362, 387, 601, 672, 747
Bst6I	CTCTTC	2 cut(s)	390, 452
BstACI	GRCGYC	2 cut(s)	809, 824
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	4 cut(s)	342, 435, 721, 878
BstFNI	CGCG	3 cut(s)	316, 329, 331
BstHHI	GCGC	2 cut(s)	316, 331
BstKTI	GATC	8 cut(s)	45, 85, 145, 247, 381, 444, 505, 511
BstMAI	GTCTC	2 cut(s)	454, 755
BstMBI	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstUI	CGCG	3 cut(s)	316, 329, 331
BstX2I	RGATCY	2 cut(s)	244, 502
BstYI	RGATCY	2 cut(s)	244, 502
BtsCI	GGATG	4 cut(s)	342, 435, 721, 878
BveI	ACCTGC	2 cut(s)	124, 181
CfoI	GCGC	2 cut(s)	316, 331
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	113, 250
CpoI	CGGWCCG	1 cut(s)	250
CseI	GACGC	2 cut(s)	569, 745
Csp6I	GTAC	1 cut(s)	340
CspAI	ACCGGT	1 cut(s)	252
CspI	CGGWCCG	1 cut(s)	250
CviJI	RGCY	3 cut(s)	100, 409, 987
CviKI_1	RGCY	3 cut(s)	100, 409, 987
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	8 cut(s)	44, 84, 144, 246, 380, 443, 504, 510
DpnII	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
DrdI	GACNNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	390, 452
EarI	CTCTTC	2 cut(s)	390, 452
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	113, 250
Eco88I	CYCGRG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	793
Esp3I	CGTCTC	1 cut(s)	755
FaiI	YATR	7 cut(s)	67, 134, 228, 311, 656, 734, 903
FaqI	GGGAC	2 cut(s)	126, 300
FauI	CCCGC	1 cut(s)	324
FblI	GTMKAC	3 cut(s)	596, 806, 827
FokI	GGATG	4 cut(s)	349, 442, 728, 885
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	2 cut(s)	315, 330
HapII	CCGG	7 cut(s)	248, 253, 436, 464, 700, 713, 842
HgaI	GACGC	2 cut(s)	569, 745
HhaI	GCGC	2 cut(s)	316, 331
Hin1I	GRCGYC	2 cut(s)	809, 824
Hin6I	GCGC	2 cut(s)	314, 329
HinP1I	GCGC	2 cut(s)	314, 329
HincII	GTYRAC	5 cut(s)	215, 597, 807, 828, 853
HindII	GTYRAC	5 cut(s)	215, 597, 807, 828, 853
HinfI	GANTC	5 cut(s)	165, 421, 691, 703, 935
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	7 cut(s)	248, 253, 436, 464, 700, 713, 842
HphI	GGTGA	3 cut(s)	374, 613, 702
Hpy166II	GTNNAC	5 cut(s)	215, 597, 807, 828, 853
Hpy188I	TCNGA	4 cut(s)	72, 426, 568, 610
Hpy188III	TCNNGA	7 cut(s)	58, 248, 347, 506, 532, 589, 790
Hpy8I	GTNNAC	5 cut(s)	215, 597, 807, 828, 853
HpyAV	CCTTC	3 cut(s)	96, 629, 891
HpyCH4III	ACNGT	7 cut(s)	128, 344, 362, 387, 601, 672, 747
HpyCH4IV	ACGT	6 cut(s)	39, 800, 809, 824, 830, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	6 cut(s)	39, 800, 809, 824, 830, 917
Hsp92I	GRCGYC	2 cut(s)	809, 824
HspAI	GCGC	2 cut(s)	314, 329
Kpn2I	TCCGGA	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	406, 466
LweI	GCATC	2 cut(s)	516, 774
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	6 cut(s)	39, 800, 809, 824, 830, 917
MaeIII	GTNAC	3 cut(s)	17, 586, 755
MalI	GATC	8 cut(s)	44, 84, 144, 246, 380, 443, 504, 510
MboI	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
MflI	RGATCY	2 cut(s)	244, 502
MluCI	AATT	2 cut(s)	193, 793
MlyI	GAGTC	1 cut(s)	944
MmeI	TCCRAC	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	2 cut(s)	389, 852
MspI	CCGG	7 cut(s)	248, 253, 436, 464, 700, 713, 842
MvnI	CGCG	3 cut(s)	316, 329, 331
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeII	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
NlaIV	GGNNCC	2 cut(s)	114, 246
NmuCI	GTSAC	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	3 cut(s)	788, 797, 806
PfeI	GAWTC	4 cut(s)	165, 421, 691, 703
PflMI	CCANNNNNTGG	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	252
PleI	GAGTC	1 cut(s)	943
PpsI	GAGTC	1 cut(s)	943
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	114, 246
PspPI	GGNCC	2 cut(s)	113, 250
PspPPI	RGGWCCY	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	244, 502
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
Rsr2I	CGGWCCG	1 cut(s)	250
RsrII	CGGWCCG	1 cut(s)	250
SalI	GTCGAC	3 cut(s)	595, 805, 826
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	389, 852
Sau3AI	GATC	8 cut(s)	42, 82, 142, 244, 378, 441, 502, 508
Sau96I	GGNCC	2 cut(s)	113, 250
SchI	GAGTC	1 cut(s)	944
SfaNI	GCATC	2 cut(s)	516, 774
Sfr274I	CTCGAG	1 cut(s)	530
SgrDI	CGTCGACG	2 cut(s)	805, 826
SinI	GGWCC	2 cut(s)	113, 250
SlaI	CTCGAG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	2 cut(s)	193, 793
SsiI	CCGC	2 cut(s)	331, 956
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	7 cut(s)	128, 344, 362, 387, 601, 672, 747
TaiI	ACGT	6 cut(s)	42, 803, 812, 827, 833, 920
TasI	AATT	2 cut(s)	193, 793
TfiI	GAWTC	4 cut(s)	165, 421, 691, 703
Tru1I	TTAA	2 cut(s)	389, 852
Tru9I	TTAA	2 cut(s)	389, 852
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	4 cut(s)	43, 121, 446, 648
TspGWI	ACGGA	4 cut(s)	467, 556, 701, 870
Van91I	CCANNNNNTGG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	113, 250
XapI	RAATTY	1 cut(s)	793
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	3 cut(s)	596, 806, 827
XspI	CTAG	1 cut(s)	410
ZraI	GACGTC	2 cut(s)	810, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.