Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Reverse (-)

26164952 .. 26165305

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCTTTCTTCAGAGAGTCGCTGAGGATCCCGAGATTTTGGCACGTATGATGCGGGAGAAGGACCGGAGACTCGCGGAGGGTTTGGGGGACAAGAAGCGTCGGCTGGTGATAGCGTCGACGTCGTCCACGTCATCATTGGGGATGGGGGCGACAGCTTCCGTGAAGACTGAGGATGAAGTTGACAGGGCGATGGGGGTGATTCATCGCCGGAGATGGGTTTTGAGATGGAGAGCTTTTCTCGGGGGTCGACGTCGCCGGAGGAGTCGACGGCGCAGGGGTGGTGGAGCCAGAAGCAGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTCTATGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

117

Amino Acids

13.52

Weight (kDa)

12.0

Isoelectric Point (pI)

115.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	125, 256
Acc36I	ACCTGC	1 cut(s)	288
AccI	GTMKAC	3 cut(s)	119, 250, 268
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	55, 77
AclWI	GGATC	2 cut(s)	23, 36
AcyI	GRCGYC	2 cut(s)	122, 253
AfiI	CCNNNNNNNGG	2 cut(s)	217, 297
AjiI	CACGTC	1 cut(s)	132
AluBI	AGCT	2 cut(s)	158, 236
AluI	AGCT	2 cut(s)	158, 236
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	23, 36
Ama87I	CYCGRG	2 cut(s)	32, 242
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	121, 211
AvaI	CYCGRG	2 cut(s)	32, 242
AvaII	GGWCC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	24
BccI	CCATC	4 cut(s)	139, 187, 210, 222
BceAI	ACGGC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	2 cut(s)	32, 242
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	30, 289
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
Bpu10I	CCTNAGC	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	122, 253
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 297
BseGI	GGATG	2 cut(s)	150, 181
BseLI	CCNNNNNNNGG	2 cut(s)	217, 297
BseMII	CTCAG	2 cut(s)	15, 162
BseRI	GAGGAG	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	32, 242
BsiSI	CCGG	3 cut(s)	67, 211, 259
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	217, 297
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	32, 242
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	55, 77
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	16, 163
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	30, 289
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	23, 36
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	2 cut(s)	122, 253
BstACI	GRCGYC	2 cut(s)	122, 253
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	24, 171
BstF5I	GGATG	2 cut(s)	150, 181
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	28
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	2 cut(s)	191, 206
BtrI	CACGTC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	150, 181
BveI	ACCTGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	89, 105
CviJI	RGCY	5 cut(s)	5, 106, 158, 236, 290
CviKI_1	RGCY	5 cut(s)	5, 106, 158, 236, 290
DdeI	CTNAG	2 cut(s)	24, 171
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	2 cut(s)	32, 242
FaiI	YATR	3 cut(s)	50, 335, 346
FaqI	GGGAC	1 cut(s)	104
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	3 cut(s)	119, 250, 268
FokI	GGATG	2 cut(s)	157, 188
GlaI	GCGC	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	67, 211, 259
HgaI	GACGC	2 cut(s)	89, 105
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	2 cut(s)	122, 253
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	4 cut(s)	120, 184, 251, 269
HindII	GTYRAC	4 cut(s)	120, 184, 251, 269
HinfI	GANTC	5 cut(s)	18, 72, 202, 265, 312
HpaII	CCGG	3 cut(s)	67, 211, 259
HphI	GGTGA	2 cut(s)	121, 211
Hpy166II	GTNNAC	5 cut(s)	120, 129, 184, 251, 269
Hpy188I	TCNGA	3 cut(s)	15, 311, 317
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	5 cut(s)	120, 129, 184, 251, 269
Hpy99I	CGWCG	7 cut(s)	105, 121, 124, 127, 255, 258, 273
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	4 cut(s)	46, 122, 131, 253
HpyF3I	CTNAG	2 cut(s)	24, 171
HpySE526I	ACGT	4 cut(s)	46, 122, 131, 253
Hsp92I	GRCGYC	2 cut(s)	122, 253
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	8 cut(s)	80, 92, 172, 224, 262, 272, 283, 304
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	4 cut(s)	46, 122, 131, 253
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	3 cut(s)	27, 66, 274
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	19, 73, 166, 255
MspI	CCGG	3 cut(s)	67, 211, 259
MvnI	CGCG	1 cut(s)	77
NdeII	GATC	1 cut(s)	28
NlaIV	GGNNCC	2 cut(s)	30, 289
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	202, 312
PflFI	GACNNNGTC	1 cut(s)	124
PleI	GAGTC	3 cut(s)	26, 66, 273
PpsI	GAGTC	3 cut(s)	26, 66, 273
Ppu21I	YACGTR	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	30, 289
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	124
SalI	GTCGAC	3 cut(s)	118, 249, 267
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	27, 66, 274
SetI	ASST	7 cut(s)	49, 125, 134, 160, 238, 256, 302
SfaNI	GCATC	1 cut(s)	42
SgrDI	CGTCGACG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	55, 77
TaiI	ACGT	4 cut(s)	49, 125, 134, 256
TaqI	TCGA	3 cut(s)	119, 250, 268
TasI	AATT	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	202, 312
TspDTI	ATGAA	2 cut(s)	192, 194
TspGWI	ACGGA	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	3 cut(s)	119, 250, 268
ZraI	GACGTC	2 cut(s)	123, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.