Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004514.1

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Reverse (-)

78773 .. 79938

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004514.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgataacgaacacatcacacggaggagagcagcagcaccgccggttggttcagaatccgagggcttcagaaaagcccatggaggacaacggcaacgtcgtcgcgccgttcgttatgaagacttatcagatggtcagcgatcctacaacggacaggttaatcgcttgggggagggctaacaacagcttcatcgtcgtcgagcctctggagttctcgcagcggctgttgccggcttatttcaagcataataacttctcgagcttcgtccggcagctcaatacttatggattcaggaaggttgatccggacaggtgggagtttgcgaacgagtggttcctgcgggggcagacgcatttgttgaagaacgtggtgaggagaaaacataataacaacagggcggtgctgaacacgacgacggcgtatgggaagtcggaggagcttgacgacgaagaaatagcgacggagatagcgaggctgaggcaggagcagaggagcttagaggaagaggtggagaatatgagcaagagattggaggcgacggagagaagaccgcagcagatgatggcgtttcttcacagagtcgctgaggatcccgagattttgccacgtatgatgctggagaaggaccggagactcgcggaggggttgggggccaagaagcgtcggctggtgatagcgtccacgtcttccacgtcatcatcggggatgggggcgacggcttccgtgaagactgaggatgaagttgacggggcgatgggcgtgatttcgtcgccggagacgggttttgagatggagagcttttctcgggggtcgacgtcgccggaggcgtccacggcgcaggggtggtggagccagaagcgggttgtgggtcggaatcggagtgataaggagttgtatggtaattctacggggttagcgacgcagtcgggtcatggaaatgggaatagtagtcattccgggtacgggtttggcccgtttggatatagtggaaataggagtggtagtggggaagtgggttattttgcggagctggaagagagtccaccaccgccttatccattctcactgttagaaggtgggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

361

Amino Acids

40.44

Weight (kDa)

6.3

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	818
AccI	GTMKAC	1 cut(s)	812
AccII	CGCG	2 cut(s)	104, 638
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	9 cut(s)	40, 220, 340, 398, 551, 638, 859, 1025, 1049
AclWI	GGATC	4 cut(s)	134, 296, 584, 597
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	2 cut(s)	815, 827
AfaI	GTAC	1 cut(s)	962
AfiI	CCNNNNNNNGG	4 cut(s)	46, 779, 859, 963
AgsI	TTSAA	2 cut(s)	241, 361
AjiI	CACGTC	2 cut(s)	684, 693
AluBI	AGCT	7 cut(s)	186, 261, 274, 439, 495, 798, 1030
AluI	AGCT	7 cut(s)	186, 261, 274, 439, 495, 798, 1030
Alw26I	GTCTC	2 cut(s)	625, 770
AlwI	GGATC	4 cut(s)	134, 296, 584, 597
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	3 cut(s)	256, 593, 804
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	2 cut(s)	651, 970
ApeKI	GCWGC	5 cut(s)	31, 34, 217, 271, 553
AspLEI	GCGC	2 cut(s)	106, 838
AspS9I	GGNCC	3 cut(s)	625, 651, 971
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	2 cut(s)	382, 682
AvaI	CYCGRG	3 cut(s)	256, 593, 804
AvaII	GGWCC	1 cut(s)	625
BamHI	GGATCC	1 cut(s)	589
BbsI	GAAGAC	4 cut(s)	125, 553, 678, 734
BbvCI	CCTCAGC	2 cut(s)	476, 585
BbvI	GCAGC	5 cut(s)	43, 46, 229, 283, 565
BccI	CCATC	5 cut(s)	124, 556, 700, 748, 784
BceAI	ACGGC	5 cut(s)	91, 106, 432, 732, 849
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	625, 770
BisI	GCNGC	6 cut(s)	32, 35, 218, 221, 272, 554
BlsI	GCNGC	6 cut(s)	33, 36, 219, 222, 273, 555
Bme1390I	CCNGG	1 cut(s)	958
Bme18I	GGWCC	1 cut(s)	625
BmeT110I	CYCGRG	3 cut(s)	256, 593, 804
BmgBI	CACGTC	2 cut(s)	684, 693
BmgT120I	GGNCC	3 cut(s)	625, 651, 971
BmiI	GGNNCC	4 cut(s)	335, 591, 652, 851
BmrFI	CCNGG	1 cut(s)	958
BmsI	GCATC	1 cut(s)	603
BpiI	GAAGAC	4 cut(s)	125, 553, 678, 734
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpmI	CTGGAG	2 cut(s)	227, 638
Bpu10I	CCTNAGC	2 cut(s)	476, 585
BpuMI	CCSGG	1 cut(s)	958
BsaAI	YACGTR	1 cut(s)	608
BsaHI	GRCGYC	2 cut(s)	815, 827
BsaJI	CCNNGG	3 cut(s)	59, 78, 831
BsaWI	WCCGGW	2 cut(s)	304, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 779, 859, 963
Bse118I	RCCGGY	2 cut(s)	42, 229
BseAI	TCCGGA	1 cut(s)	304
BseDI	CCNNGG	3 cut(s)	59, 78, 831
BseGI	GGATG	2 cut(s)	711, 742
BseLI	CCNNNNNNNGG	4 cut(s)	46, 779, 859, 963
BseMII	CTCAG	3 cut(s)	467, 576, 723
BseRI	GAGGAG	4 cut(s)	39, 388, 449, 505
BseXI	GCAGC	5 cut(s)	43, 46, 229, 283, 565
Bsh1236I	CGCG	2 cut(s)	104, 638
BshFI	GGCC	2 cut(s)	653, 972
BsiHKCI	CYCGRG	3 cut(s)	256, 593, 804
BsiSI	CCGG	8 cut(s)	43, 230, 268, 305, 628, 773, 821, 957
BslI	CCNNNNNNNGG	4 cut(s)	46, 779, 859, 963
BsmAI	GTCTC	2 cut(s)	625, 770
BsmBI	CGTCTC	1 cut(s)	770
BsnI	GGCC	2 cut(s)	653, 972
BsoBI	CYCGRG	3 cut(s)	256, 593, 804
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	139, 301, 589
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	9 cut(s)	40, 220, 340, 398, 551, 638, 859, 1025, 1049
BspANI	GGCC	2 cut(s)	653, 972
BspCNI	CTCAG	3 cut(s)	468, 577, 724
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	2 cut(s)	104, 638
BspLI	GGNNCC	4 cut(s)	335, 591, 652, 851
BspPI	GGATC	4 cut(s)	134, 296, 584, 597
BsrFI	RCCGGY	2 cut(s)	42, 229
BssAI	RCCGGY	2 cut(s)	42, 229
BssECI	CCNNGG	3 cut(s)	59, 78, 831
BssMI	GATC	3 cut(s)	139, 301, 589
BssNI	GRCGYC	2 cut(s)	815, 827
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	1068
Bst6I	CTCTTC	2 cut(s)	498, 1029
BstACI	GRCGYC	2 cut(s)	815, 827
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	4 cut(s)	476, 496, 585, 732
BstDSI	CCRYGG	2 cut(s)	78, 831
BstF5I	GGATG	2 cut(s)	711, 742
BstFNI	CGCG	2 cut(s)	104, 638
BstHHI	GCGC	2 cut(s)	106, 838
BstKTI	GATC	3 cut(s)	142, 304, 592
BstMAI	GTCTC	2 cut(s)	625, 770
BstMBI	GATC	3 cut(s)	139, 301, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 833
BstSCI	CCNGG	1 cut(s)	956
BstUI	CGCG	2 cut(s)	104, 638
BstV1I	GCAGC	5 cut(s)	43, 46, 229, 283, 565
BstV2I	GAAGAC	4 cut(s)	125, 553, 678, 734
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	653, 972
BtgI	CCRYGG	2 cut(s)	78, 831
BtgZI	GCGATG	1 cut(s)	767
BtrI	CACGTC	2 cut(s)	684, 693
BtsCI	GGATG	2 cut(s)	711, 742
BtsIMutI	CAGTG	1 cut(s)	1064
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	2 cut(s)	106, 838
Cfr10I	RCCGGY	2 cut(s)	42, 229
Cfr13I	GGNCC	3 cut(s)	625, 651, 971
CseI	GACGC	5 cut(s)	358, 650, 666, 816, 928
Csp6I	GTAC	1 cut(s)	961
CviAII	CATG	2 cut(s)	79, 932
CviQI	GTAC	1 cut(s)	961
DdeI	CTNAG	4 cut(s)	476, 496, 585, 732
DpnI	GATC	3 cut(s)	141, 303, 591
DpnII	GATC	3 cut(s)	139, 301, 589
Eam1104I	CTCTTC	2 cut(s)	498, 1029
EarI	CTCTTC	2 cut(s)	498, 1029
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	3 cut(s)	256, 593, 804
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	2 cut(s)	82, 935
FatI	CATG	2 cut(s)	78, 931
FauI	CCCGC	2 cut(s)	333, 852
FblI	GTMKAC	1 cut(s)	812
Fnu4HI	GCNGC	6 cut(s)	32, 35, 218, 221, 272, 554
FokI	GGATG	2 cut(s)	718, 749
Fsp4HI	GCNGC	6 cut(s)	32, 35, 218, 221, 272, 554
GlaI	GCGC	2 cut(s)	105, 837
GluI	GCNGC	6 cut(s)	32, 35, 218, 221, 272, 554
GsuI	CTGGAG	2 cut(s)	227, 638
HaeIII	GGCC	2 cut(s)	653, 972
HapII	CCGG	8 cut(s)	43, 230, 268, 305, 628, 773, 821, 957
HgaI	GACGC	5 cut(s)	358, 650, 666, 816, 928
HhaI	GCGC	2 cut(s)	106, 838
Hin1I	GRCGYC	2 cut(s)	815, 827
Hin1II	CATG	2 cut(s)	82, 935
Hin6I	GCGC	2 cut(s)	104, 836
HinP1I	GCGC	2 cut(s)	104, 836
HincII	GTYRAC	2 cut(s)	745, 813
HindII	GTYRAC	2 cut(s)	745, 813
HinfI	GANTC	6 cut(s)	55, 288, 579, 633, 874, 1039
HpaII	CCGG	8 cut(s)	43, 230, 268, 305, 628, 773, 821, 957
HphI	GGTGA	2 cut(s)	382, 682
Hpy166II	GTNNAC	5 cut(s)	681, 745, 813, 831, 1043
Hpy188I	TCNGA	7 cut(s)	54, 60, 70, 129, 433, 873, 879
Hpy188III	TCNNGA	5 cut(s)	206, 256, 292, 305, 593
Hpy8I	GTNNAC	5 cut(s)	681, 745, 813, 831, 1043
HpyAV	CCTTC	3 cut(s)	289, 616, 1067
HpyCH4III	ACNGT	1 cut(s)	1068
HpyCH4IV	ACGT	6 cut(s)	96, 366, 607, 683, 692, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 833
HpyF3I	CTNAG	4 cut(s)	476, 496, 585, 732
HpySE526I	ACGT	6 cut(s)	96, 366, 607, 683, 692, 815
Hsp92I	GRCGYC	2 cut(s)	815, 827
Hsp92II	CATG	2 cut(s)	82, 935
HspAI	GCGC	2 cut(s)	104, 836
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	139, 301, 589
LmnI	GCTCC	5 cut(s)	436, 484, 492, 849, 1027
Lsp1109I	GCAGC	5 cut(s)	43, 46, 229, 283, 565
LweI	GCATC	1 cut(s)	603
MaeII	ACGT	6 cut(s)	96, 366, 607, 683, 692, 815
MalI	GATC	3 cut(s)	141, 303, 591
MboI	GATC	3 cut(s)	139, 301, 589
MboII	GAAGA	9 cut(s)	130, 373, 461, 515, 558, 563, 678, 739, 1046
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	1 cut(s)	901
MlyI	GAGTC	3 cut(s)	588, 627, 1048
MmeI	TCCRAC	2 cut(s)	411, 851
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	936
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	8 cut(s)	43, 230, 268, 305, 628, 773, 821, 957
MspR9I	CCNGG	1 cut(s)	958
MvnI	CGCG	2 cut(s)	104, 638
MwoI	GCNNNNNNNGC	2 cut(s)	226, 833
NaeI	GCCGGC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	958
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	139, 301, 589
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	82, 935
NlaIV	GGNNCC	4 cut(s)	335, 591, 652, 851
PaeR7I	CTCGAG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	7 cut(s)	96, 108, 416, 467, 689, 824, 914
PdiI	GCCGGC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	55, 288, 874
PflFI	GACNNNGTC	1 cut(s)	922
PkrI	GCNGC	6 cut(s)	33, 36, 219, 222, 273, 555
PleI	GAGTC	3 cut(s)	587, 627, 1047
PpsI	GAGTC	3 cut(s)	587, 627, 1047
Ppu21I	YACGTR	1 cut(s)	608
PspN4I	GGNNCC	4 cut(s)	335, 591, 652, 851
PspPI	GGNCC	3 cut(s)	625, 651, 971
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	922
RsaI	GTAC	1 cut(s)	962
RsaNI	GTAC	1 cut(s)	961
RseI	CAYNNNNRTG	1 cut(s)	936
SalI	GTCGAC	1 cut(s)	811
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	6 cut(s)	32, 35, 218, 221, 272, 554
Sau3AI	GATC	3 cut(s)	139, 301, 589
Sau96I	GGNCC	3 cut(s)	625, 651, 971
SchI	GAGTC	3 cut(s)	588, 627, 1048
ScrFI	CCNGG	1 cut(s)	958
SfaNI	GCATC	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	625
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	1 cut(s)	901
SsiI	CCGC	9 cut(s)	40, 220, 340, 398, 551, 638, 859, 1025, 1049
StyD4I	CCNGG	1 cut(s)	956
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	1068
TaiI	ACGT	6 cut(s)	99, 369, 610, 686, 695, 818
TaqI	TCGA	3 cut(s)	198, 257, 812
TasI	AATT	1 cut(s)	901
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	55, 288, 874
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	1071
TseI	GCWGC	5 cut(s)	31, 34, 217, 271, 553
TspDTI	ATGAA	3 cut(s)	131, 178, 753
TspGWI	ACGGA	5 cut(s)	36, 164, 476, 554, 712
TspRI	CASTG	1 cut(s)	1071
Tth111I	GACNNNGTC	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	812
ZraI	GACGTC	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.