Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Reverse (-)

3740846 .. 3742089

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1046900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATGATGGAGGAGAGCAACAACGTCATCGCACCGTTCGTTATGAAGACTTACCAGATGGTCAACGATTCGACGACGGACAATTTAATCACGTGGGGAAGAGCCAACAACAGCTTCGTCGTCGTCGACCCTGTGGTCTTCTCTCAGAGACTGTTACCCGCTTACTTCAAGCACAACAATTTCTCCAGCTTCGTACGCCAGCTCAACACCTATGGATTTCGAAAGGTCGATCCAGATAAGTGGGAGTTCGCGAGCGAGTGGTTTCTGCGAGGGCAGACGCATTTGCTGAGAAACGTGGCGAGGAGAAAACACATGGGCAAGAGTTCGAGTTCGAATTCAAACGCAAACTTCTTACAGGCGAAGCACGAGGAGCTCGATGGCGAAGATATAATTAGGGAGATTTCGGGGTTGAAGCAGGAGCAGAAGGCGCTGGAGCAAGAAATCGGGGATATGAACCGGCGGCTGGATGCGACGGAGCGACGGCCGCAGCAAATGATGGCGTTTCTGAACAAAGTGGCGGAGGACCCGGAGATTCTGCCACGTATGATGCTCGAGAAGGATCGCGCGACGGCGGCCCAGTTGGGGGAGAAGAAACGGCGGGTTATGATGATGGCATCGACATCGTCGTCGTCGTCGTCATCGACAATGGGGGCCACTACTTCCGTCAAAACTGAGGACGAAGATGACGGAACCGTAGCGGTAATTTCCTCATCTCCCGAAGCTGGTTTTGAGATGGAGAGTTTTAATCGGTATCCCACGCCACCGGAGGCCCAGACGGCGTCGGATTGGTTAAGGCAGAGGTGGGTTGTGGATCGGGTTCACGCTATACAAAACCCGTATAACATGAATCCGACGGCGTTGGGTCATGGGGCGGAGAATACCCGGAATAGTGGTAATTCCGCGTATGGGTATGGGAATGGGAGTGGCGGCGGCCCTGGCGGGGAAGTGGGATTCTTTACGGAGGTGGAAGCTAGTCCTCCACCGCCTTATCCATTTTCGCTATTGGAGGGAGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

340

Amino Acids

37.9

Weight (kDa)

5.53

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	13 - 102	7.8e-28	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	134, 625
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	4 cut(s)	251, 564, 566, 902
AclWI	GGATC	3 cut(s)	224, 567, 819
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	334
AcvI	CACGTG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	779
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	6 cut(s)	463, 582, 583, 722, 906, 940
AgsI	TTSAA	3 cut(s)	169, 339, 412
AjnI	CCWGG	1 cut(s)	934
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	114, 189, 202, 373, 722, 971
AluI	AGCT	6 cut(s)	114, 189, 202, 373, 722, 971
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	224, 567, 819
AlwNI	CAGNNNCTG	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	5 cut(s)	482, 573, 651, 768, 931
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	430, 566
AspS9I	GGNCC	5 cut(s)	523, 574, 651, 769, 932
AsuC2I	CCSGG	2 cut(s)	527, 883
AsuII	TTCGAA	2 cut(s)	220, 332
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	93
BbsI	GAAGAC	2 cut(s)	53, 130
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	5 cut(s)	52, 371, 490, 604, 727
BceAI	ACGGC	5 cut(s)	497, 585, 611, 792, 870
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	1 cut(s)	936
BciVI	GTATCC	1 cut(s)	762
BcnI	CCSGG	2 cut(s)	527, 883
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	972
BfoI	RGCGCY	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	762
BglI	GCCNNNNNGGC	1 cut(s)	776
BisI	GCNGC	6 cut(s)	461, 485, 488, 573, 928, 931
BlsI	GCNGC	6 cut(s)	462, 486, 489, 574, 929, 932
Bme1390I	CCNGG	3 cut(s)	527, 883, 936
Bme18I	GGWCC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	5 cut(s)	523, 574, 651, 769, 932
BmiI	GGNNCC	3 cut(s)	525, 652, 691
BmrFI	CCNGG	3 cut(s)	527, 883, 936
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	3 cut(s)	457, 537, 623
BmuI	ACTGGG	1 cut(s)	571
BpiI	GAAGAC	2 cut(s)	53, 130
BpmI	CTGGAG	2 cut(s)	169, 452
Bpu14I	TTCGAA	2 cut(s)	220, 332
BpuMI	CCSGG	2 cut(s)	527, 883
BsaAI	YACGTR	2 cut(s)	93, 542
BsaHI	GRCGYC	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	934
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	6 cut(s)	463, 582, 583, 722, 906, 940
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	1 cut(s)	934
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	6 cut(s)	463, 582, 583, 722, 906, 940
BseMII	CTCAG	3 cut(s)	158, 278, 663
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	3 cut(s)	26, 316, 383
BseX3I	CGGCCG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	4 cut(s)	251, 564, 566, 902
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	5 cut(s)	484, 575, 653, 770, 933
BsiEI	CGRYCG	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	4 cut(s)	457, 527, 764, 883
BsiWI	CGTACG	1 cut(s)	193
BslI	CCNNNNNNNGG	6 cut(s)	463, 582, 583, 722, 906, 940
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	5 cut(s)	484, 575, 653, 770, 933
BsoBI	CYCGRG	1 cut(s)	551
Bsp119I	TTCGAA	2 cut(s)	220, 332
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	229, 559, 811
Bsp68I	TCGCGA	1 cut(s)	251
BspANI	GGCC	5 cut(s)	484, 575, 653, 770, 933
BspCNI	CTCAG	3 cut(s)	157, 279, 664
BspFNI	CGCG	4 cut(s)	251, 564, 566, 902
BspLI	GGNNCC	3 cut(s)	525, 652, 691
BspPI	GGATC	3 cut(s)	224, 567, 819
BspQI	GCTCTTC	1 cut(s)	94
BspT104I	TTCGAA	2 cut(s)	220, 332
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	934
BssMI	GATC	3 cut(s)	229, 559, 811
BssNI	GRCGYC	1 cut(s)	779
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	3 cut(s)	36, 153, 694
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	779
BstBAI	YACGTR	2 cut(s)	93, 542
BstBI	TTCGAA	2 cut(s)	220, 332
BstC8I	GCNNGC	2 cut(s)	200, 253
BstDEI	CTNAG	3 cut(s)	144, 287, 672
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	4 cut(s)	251, 564, 566, 902
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	2 cut(s)	430, 566
BstKTI	GATC	3 cut(s)	232, 562, 814
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	229, 559, 811
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	7 cut(s)	195, 370, 427, 484, 572, 776, 936
BstNI	CCWGG	1 cut(s)	936
BstSCI	CCNGG	3 cut(s)	525, 881, 934
BstUI	CGCG	4 cut(s)	251, 564, 566, 902
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	2 cut(s)	53, 130
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstZI	CGGCCG	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	762
BsuRI	GGCC	5 cut(s)	484, 575, 653, 770, 933
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	472
BtuMI	TCGCGA	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	200, 253
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	2 cut(s)	430, 566
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	5 cut(s)	523, 574, 651, 769, 932
CseI	GACGC	2 cut(s)	286, 768
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	313, 844, 866
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	144, 287, 672
DpnI	GATC	3 cut(s)	231, 561, 813
DpnII	GATC	3 cut(s)	229, 559, 811
DrdI	GACNNNNNNGTC	2 cut(s)	134, 625
DseDI	GACNNNNNNGTC	2 cut(s)	134, 625
EaeI	YGGCCR	1 cut(s)	482
EagI	CGGCCG	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EciI	GGCGGA	2 cut(s)	533, 887
Ecl136II	GAGCTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	523
Eco52I	CGGCCG	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	373
Eco72I	CACGTG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	3 cut(s)	316, 847, 869
FatI	CATG	3 cut(s)	312, 843, 865
FauI	CCCGC	3 cut(s)	166, 591, 932
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	461, 485, 488, 573, 928, 931
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	6 cut(s)	461, 485, 488, 573, 928, 931
FspBI	CTAG	1 cut(s)	972
GlaI	GCGC	2 cut(s)	429, 565
GluI	GCNGC	6 cut(s)	461, 485, 488, 573, 928, 931
GsuI	CTGGAG	2 cut(s)	169, 452
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	5 cut(s)	484, 575, 653, 770, 933
HapII	CCGG	4 cut(s)	457, 527, 764, 883
HgaI	GACGC	2 cut(s)	286, 768
HhaI	GCGC	2 cut(s)	430, 566
Hin1I	GRCGYC	1 cut(s)	779
Hin1II	CATG	3 cut(s)	316, 847, 869
Hin6I	GCGC	2 cut(s)	428, 564
HinP1I	GCGC	2 cut(s)	428, 564
HincII	GTYRAC	2 cut(s)	64, 127
HindII	GTYRAC	2 cut(s)	64, 127
HinfI	GANTC	4 cut(s)	68, 532, 847, 951
HpaII	CCGG	4 cut(s)	457, 527, 764, 883
Hpy166II	GTNNAC	3 cut(s)	64, 127, 820
Hpy188I	TCNGA	4 cut(s)	147, 507, 784, 852
Hpy188III	TCNNGA	4 cut(s)	233, 250, 553, 716
Hpy8I	GTNNAC	3 cut(s)	64, 127, 820
HpyAV	CCTTC	2 cut(s)	418, 550
HpyCH4III	ACNGT	3 cut(s)	36, 153, 694
HpyCH4IV	ACGT	4 cut(s)	24, 92, 294, 541
HpyF10VI	GCNNNNNNNGC	7 cut(s)	195, 370, 427, 484, 572, 776, 936
HpyF3I	CTNAG	3 cut(s)	144, 287, 672
HpySE526I	ACGT	4 cut(s)	24, 92, 294, 541
Hsp92I	GRCGYC	1 cut(s)	779
Hsp92II	CATG	3 cut(s)	316, 847, 869
HspAI	GCGC	2 cut(s)	428, 564
Kzo9I	GATC	3 cut(s)	229, 559, 811
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	4 cut(s)	370, 418, 433, 475
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	3 cut(s)	457, 537, 623
MaeI	CTAG	1 cut(s)	972
MaeII	ACGT	4 cut(s)	24, 92, 294, 541
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	231, 561, 813
MboI	GATC	3 cut(s)	229, 559, 811
MboII	GAAGA	6 cut(s)	58, 111, 130, 395, 601, 692
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	6 cut(s)	82, 178, 334, 390, 702, 895
MmeI	TCCRAC	2 cut(s)	762, 875
MseI	TTAA	3 cut(s)	86, 744, 791
MspI	CCGG	4 cut(s)	457, 527, 764, 883
MspR9I	CCNGG	3 cut(s)	527, 883, 936
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	4 cut(s)	251, 564, 566, 902
MwoI	GCNNNNNNNGC	7 cut(s)	195, 370, 427, 484, 572, 776, 936
NciI	CCSGG	2 cut(s)	527, 883
NdeII	GATC	3 cut(s)	229, 559, 811
NlaIII	CATG	3 cut(s)	316, 847, 869
NlaIV	GGNNCC	3 cut(s)	525, 652, 691
NruI	TCGCGA	1 cut(s)	251
NspV	TTCGAA	2 cut(s)	220, 332
PaeR7I	CTCGAG	1 cut(s)	551
PciSI	GCTCTTC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	7 cut(s)	36, 123, 372, 623, 629, 632, 638
PfeI	GAWTC	4 cut(s)	68, 532, 847, 951
Pfl23II	CGTACG	1 cut(s)	193
PflFI	GACNNNGTC	2 cut(s)	622, 778
PkrI	GCNGC	6 cut(s)	462, 486, 489, 574, 929, 932
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
Ppu21I	YACGTR	2 cut(s)	93, 542
PpuMI	RGGWCCY	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	934
PspCI	CACGTG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	934
PspLI	CGTACG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	525, 652, 691
PspPI	GGNCC	5 cut(s)	523, 574, 651, 769, 932
PspPPI	RGGWCCY	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	151
PsyI	GACNNNGTC	2 cut(s)	622, 778
RruI	TCGCGA	1 cut(s)	251
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	86, 744, 791
SatI	GCNGC	6 cut(s)	461, 485, 488, 573, 928, 931
Sau3AI	GATC	3 cut(s)	229, 559, 811
Sau96I	GGNCC	5 cut(s)	523, 574, 651, 769, 932
ScrFI	CCNGG	3 cut(s)	527, 883, 936
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	457, 537, 623
Sfr274I	CTCGAG	1 cut(s)	551
SfuI	TTCGAA	2 cut(s)	220, 332
SinI	GGWCC	1 cut(s)	523
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	6 cut(s)	82, 178, 334, 390, 702, 895
SspMI	CTAG	1 cut(s)	972
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	525, 881, 934
TaaI	ACNGT	3 cut(s)	36, 153, 694
TaiI	ACGT	4 cut(s)	27, 95, 297, 544
TasI	AATT	6 cut(s)	82, 178, 334, 390, 702, 895
TauI	GCSGC	5 cut(s)	463, 487, 575, 930, 933
TfiI	GAWTC	4 cut(s)	68, 532, 847, 951
Tru1I	TTAA	3 cut(s)	86, 744, 791
Tru9I	TTAA	3 cut(s)	86, 744, 791
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	59, 467, 860
TspGWI	ACGGA	5 cut(s)	92, 488, 652, 702, 974
Tth111I	GACNNNGTC	2 cut(s)	622, 778
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.