Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021402.1

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

25298 .. 25819

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021402.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgatggcgtttcttcagagagtcactgaggatcctgagaatttaccacgtatgatgctggagaaggaccggagactcgcggagggtttgggggacaagaagcgtcagctggtgatagcgtcgacgtcgtccacgtcatcatcggggataggggcgacggcttccgtgaagactgaggatgaagttgacggggcgatgggggtgatttcatcgccggagatgggttttgagatggagagcttttcatcgccggaggcgtcgacggcgcatgggtggtggagccagaagcgggttgtgggtccgaatcggagtgataaggagttgtatggtaattcgacggggttagcgacgcagtcgggtcatgaaaatgggaatataagcaattccgggtactggtttggcccgtttaggtatagtggaaataggagtggtagtggagaagtgagttattttgtggagctggaagagagtccaccaccgccttatccattctcactgttgcatgaagaatttgcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

173

Amino Acids

18.84

Weight (kDa)

4.83

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	122, 260
AccII	CGCG	1 cut(s)	80
AciI	CCGC	3 cut(s)	80, 289, 479
AclWI	GGATC	2 cut(s)	26, 39
AcsI	RAATTY	2 cut(s)	40, 509
AcyI	GRCGYC	2 cut(s)	125, 257
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	221, 289, 393
AjiI	CACGTC	1 cut(s)	135
AluBI	AGCT	3 cut(s)	109, 240, 460
AluI	AGCT	3 cut(s)	109, 240, 460
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	26, 39
AoxI	GGCC	1 cut(s)	400
ApoI	RAATTY	2 cut(s)	40, 509
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	67, 299, 401
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	124, 214
AvaII	GGWCC	2 cut(s)	67, 299
BamHI	GGATCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	176
BccI	CCATC	3 cut(s)	190, 214, 226
BceAI	ACGGC	2 cut(s)	174, 279
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	2 cut(s)	67, 299
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	3 cut(s)	67, 299, 401
BmiI	GGNNCC	3 cut(s)	33, 281, 300
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	2 cut(s)	125, 257
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 289, 393
Bse1I	ACTGG	1 cut(s)	398
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	3 cut(s)	221, 289, 393
BseMII	CTCAG	3 cut(s)	18, 27, 165
BseNI	ACTGG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	70, 215, 251, 387
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	221, 289, 393
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	80, 289, 479
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	3 cut(s)	19, 28, 166
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	33, 281, 300
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	26, 39
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	2 cut(s)	125, 257
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	2 cut(s)	125, 257
BstBAI	YACGTR	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	27, 36, 174
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	402
BtgZI	GCGATG	3 cut(s)	195, 209, 231
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	24, 494
BveI	ACCTGC	1 cut(s)	506
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	67, 299, 401
CseI	GACGC	4 cut(s)	92, 108, 246, 358
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	3 cut(s)	269, 362, 503
CviJI	RGCY	6 cut(s)	109, 161, 240, 282, 402, 460
CviKI_1	RGCY	6 cut(s)	109, 161, 240, 282, 402, 460
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	27, 36, 174
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	67, 299
FaeI	CATG	3 cut(s)	272, 365, 506
FaiI	YATR	7 cut(s)	53, 270, 327, 363, 377, 414, 504
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	3 cut(s)	268, 361, 502
FauI	CCCGC	1 cut(s)	282
FblI	GTMKAC	2 cut(s)	122, 260
FokI	GGATG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	4 cut(s)	70, 215, 251, 387
HgaI	GACGC	4 cut(s)	92, 108, 246, 358
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	2 cut(s)	125, 257
Hin1II	CATG	3 cut(s)	272, 365, 506
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	3 cut(s)	123, 187, 261
HindII	GTYRAC	3 cut(s)	123, 187, 261
HinfI	GANTC	4 cut(s)	21, 75, 304, 469
HpaII	CCGG	4 cut(s)	70, 215, 251, 387
HphI	GGTGA	2 cut(s)	124, 214
Hpy166II	GTNNAC	5 cut(s)	123, 132, 187, 261, 473
Hpy188I	TCNGA	3 cut(s)	18, 303, 309
Hpy188III	TCNNGA	2 cut(s)	35, 362
Hpy8I	GTNNAC	5 cut(s)	123, 132, 187, 261, 473
Hpy99I	CGWCG	8 cut(s)	124, 127, 130, 160, 262, 265, 340, 352
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	3 cut(s)	49, 125, 134
HpyCH4V	TGCA	2 cut(s)	502, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	27, 36, 174
HpySE526I	ACGT	3 cut(s)	49, 125, 134
Hsp92I	GRCGYC	2 cut(s)	125, 257
Hsp92II	CATG	3 cut(s)	272, 365, 506
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	279, 457
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	3 cut(s)	49, 125, 134
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	5, 181, 476, 518
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	4 cut(s)	40, 331, 382, 509
MlyI	GAGTC	3 cut(s)	30, 69, 478
MnlI	CCTC	4 cut(s)	22, 76, 169, 247
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	4 cut(s)	70, 215, 251, 387
MspR9I	CCNGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	388
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	272, 365, 506
NlaIV	GGNNCC	3 cut(s)	33, 281, 300
NmuCI	GTSAC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	3 cut(s)	131, 254, 344
PfeI	GAWTC	1 cut(s)	304
PflFI	GACNNNGTC	2 cut(s)	127, 352
PleI	GAGTC	3 cut(s)	29, 69, 477
PpsI	GAGTC	3 cut(s)	29, 69, 477
Ppu21I	YACGTR	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	33, 281, 300
PspPI	GGNCC	3 cut(s)	67, 299, 401
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	2 cut(s)	127, 352
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	2 cut(s)	121, 259
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	3 cut(s)	67, 299, 401
SchI	GAGTC	3 cut(s)	30, 69, 478
ScrFI	CCNGG	1 cut(s)	388
SetI	ASST	8 cut(s)	52, 111, 128, 137, 242, 413, 462, 520
SfaNI	GCATC	1 cut(s)	45
SgrDI	CGTCGACG	2 cut(s)	121, 259
SinI	GGWCC	2 cut(s)	67, 299
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	40, 331, 382, 509
SsiI	CCGC	3 cut(s)	80, 289, 479
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	3 cut(s)	52, 128, 137
TaqI	TCGA	3 cut(s)	122, 260, 335
TasI	AATT	4 cut(s)	40, 331, 382, 509
TfiI	GAWTC	1 cut(s)	304
TscAI	CASTG	2 cut(s)	31, 501
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	5 cut(s)	195, 198, 234, 378, 519
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	31, 501
Tth111I	GACNNNGTC	2 cut(s)	127, 352
VpaK11BI	GGWCC	2 cut(s)	67, 299
XapI	RAATTY	2 cut(s)	40, 509
XmiI	GTMKAC	2 cut(s)	122, 260
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.