Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

5676623 .. 5677492

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATGCGGAGGACCCCGAAGATTCTGCCACGTATGATGCTGGAAAAGGACCGGAGAGTCGCGGAGGGGGACAAGAAGCGGCAGCTGATGATAGCCTCCACGTCGTCCACGTTGTCGTCGGGGATGGGGGCGACAATTGCTTTCGTGAAGACTGAGGAGGAAGTTGACGGGGCGACGGGGGTGCTTTCGTCGCCGAAGCCGGGTAATGAGGCCAAGGAGGAGTCATCTAGGTCCAATGGAACTGAGTTGGGATGTATCTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

89

Amino Acids

9.61

Weight (kDa)

8.85

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	7, 62, 79
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	102
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	12, 49, 231
AsuC2I	CCSGG	1 cut(s)	201
AvaII	GGWCC	3 cut(s)	12, 49, 231
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 163, 197
BcnI	CCSGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	2 cut(s)	80, 83
BlsI	GCNGC	2 cut(s)	81, 84
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	3 cut(s)	12, 49, 231
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	12, 49, 231
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	129, 257
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	144, 234
BseRI	GAGGAG	2 cut(s)	170, 233
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	52, 200
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	212
BspACI	CCGC	3 cut(s)	7, 62, 79
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	145, 235
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	153, 243
BstF5I	GGATG	2 cut(s)	129, 257
BstFNI	CGCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 190
BstSCI	CCNGG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	129, 257
Cfr13I	GGNCC	3 cut(s)	12, 49, 231
CviJI	RGCY	4 cut(s)	85, 95, 199, 212
CviKI_1	RGCY	4 cut(s)	85, 95, 199, 212
DdeI	CTNAG	2 cut(s)	153, 243
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	3 cut(s)	12, 49, 231
EcoO109I	RGGNCCY	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	80, 83
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	80, 83
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	80, 83
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	52, 200
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	22, 57, 221
HpaII	CCGG	2 cut(s)	52, 200
Hpy166II	GTNNAC	2 cut(s)	108, 166
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	108, 166
Hpy99I	CGWCG	4 cut(s)	106, 121, 178, 193
HpyCH4IV	ACGT	3 cut(s)	31, 101, 110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 190
HpyF3I	CTNAG	2 cut(s)	153, 243
HpySE526I	ACGT	3 cut(s)	31, 101, 110
LpnPI	CCDG	3 cut(s)	26, 65, 213
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	31, 101, 110
MboII	GAAGA	2 cut(s)	31, 160
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	66, 230
MnlI	CCTC	7 cut(s)	3, 58, 106, 148, 151, 202, 211
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	52, 200
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	137, 190
NciI	CCSGG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	81, 84
PleI	GAGTC	2 cut(s)	65, 229
PpsI	GAGTC	2 cut(s)	65, 229
Ppu21I	YACGTR	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	12, 49, 231
PspPPI	RGGWCCY	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	85
SatI	GCNGC	2 cut(s)	80, 83
Sau96I	GGNCC	3 cut(s)	12, 49, 231
SchI	GAGTC	2 cut(s)	66, 230
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	5 cut(s)	34, 87, 104, 113, 233
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	3 cut(s)	12, 49, 231
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	3 cut(s)	7, 62, 79
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	3 cut(s)	34, 104, 113
TasI	AATT	1 cut(s)	135
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	82
VpaK11BI	GGWCC	3 cut(s)	12, 49, 231
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.