Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

4923569 .. 4924039

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGCTGGAGAAGGACCGGAGACTCGCGGAGGGTTTGGGGGACAAGAAGCGTCGGCTGGTGATAGCGTCGACGTCGTCCACGTCATCATCGGGGATAGGGGCGACGGCTTCTGTGAAGACTGAGGATGAAGTTGACGGGACGATGAGGGTGATTTCATCGCCGGAGATGGGTTTTGAGATGGAGAGCTTTTCATCGCCGGAGGCGTCGACGGTGCATGGGTGGTGGAGCCAGAAGCGGGTTGTGGGTCCGAATCGGAGTGATAAGGAGTTGTATGGTAATTCGACGGGGTTAGCGACGCAGTCGGGTCATGGAAATGGGAATATAATTAATTTCGGGTACTGGTTTGGCCCGTTTAGGTATAGTGGAAATAGGAGTGGTAGTGGAGAAGTGAGTTATTTTGTGGAGCTGGAAGAGAGTCCACCACCGCCTTATCCATTCTCACTGTTGCATGAAGAATTTGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

156

Amino Acids

17.01

Weight (kDa)

5.23

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	455
AccI	GTMKAC	2 cut(s)	71, 209
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	29, 238, 428
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	2 cut(s)	74, 206
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	170, 238
AjiI	CACGTC	1 cut(s)	84
AluBI	AGCT	2 cut(s)	189, 409
AluI	AGCT	2 cut(s)	189, 409
Alw26I	GTCTC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	458
AseI	ATTAAT	1 cut(s)	330
AspS9I	GGNCC	3 cut(s)	16, 248, 350
AsuHPI	GGTGA	2 cut(s)	73, 163
AvaII	GGWCC	2 cut(s)	16, 248
BbsI	GAAGAC	1 cut(s)	125
BccI	CCATC	2 cut(s)	163, 175
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	455
Bme18I	GGWCC	2 cut(s)	16, 248
BmgBI	CACGTC	1 cut(s)	84
BmgT120I	GGNCC	3 cut(s)	16, 248, 350
BmiI	GGNNCC	2 cut(s)	230, 249
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	74, 206
BsaWI	WCCGGW	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 238
Bse1I	ACTGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	170, 238
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	351
BsiSI	CCGG	3 cut(s)	19, 164, 200
BslFI	GGGAC	2 cut(s)	56, 154
BslI	CCNNNNNNNGG	2 cut(s)	170, 238
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	56, 154
BsnI	GGCC	1 cut(s)	351
BspACI	CCGC	3 cut(s)	29, 238, 428
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	230, 249
BspMI	ACCTGC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	347
BssNI	GRCGYC	2 cut(s)	74, 206
Bst4CI	ACNGT	2 cut(s)	214, 447
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	2 cut(s)	74, 206
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	16
BstUI	CGCG	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	351
BtgZI	GCGATG	2 cut(s)	144, 180
BtrI	CACGTC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	16, 248, 350
CseI	GACGC	4 cut(s)	41, 57, 195, 307
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	218, 311, 452
CviJI	RGCY	6 cut(s)	58, 110, 189, 231, 351, 409
CviKI_1	RGCY	6 cut(s)	58, 110, 189, 231, 351, 409
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	16, 248
FaeI	CATG	3 cut(s)	221, 314, 455
FaiI	YATR	6 cut(s)	219, 276, 312, 326, 363, 453
FaqI	GGGAC	2 cut(s)	56, 154
FatI	CATG	3 cut(s)	217, 310, 451
FauI	CCCGC	1 cut(s)	231
FblI	GTMKAC	2 cut(s)	71, 209
FokI	GGATG	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	3 cut(s)	19, 164, 200
HgaI	GACGC	4 cut(s)	41, 57, 195, 307
Hin1I	GRCGYC	2 cut(s)	74, 206
Hin1II	CATG	3 cut(s)	221, 314, 455
HincII	GTYRAC	3 cut(s)	72, 136, 210
HindII	GTYRAC	3 cut(s)	72, 136, 210
HinfI	GANTC	3 cut(s)	24, 253, 418
HpaII	CCGG	3 cut(s)	19, 164, 200
HphI	GGTGA	2 cut(s)	73, 163
Hpy166II	GTNNAC	5 cut(s)	72, 81, 136, 210, 422
Hpy188I	TCNGA	2 cut(s)	252, 258
Hpy8I	GTNNAC	5 cut(s)	72, 81, 136, 210, 422
Hpy99I	CGWCG	9 cut(s)	57, 73, 76, 79, 109, 211, 214, 289, 301
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	214, 447
HpyCH4IV	ACGT	2 cut(s)	74, 83
HpyCH4V	TGCA	3 cut(s)	217, 451, 464
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	74, 83
Hsp92I	GRCGYC	2 cut(s)	74, 206
Hsp92II	CATG	3 cut(s)	221, 314, 455
LmnI	GCTCC	2 cut(s)	228, 406
LpnPI	CCDG	8 cut(s)	32, 44, 177, 213, 245, 328, 395, 450
MaeII	ACGT	2 cut(s)	74, 83
MboII	GAAGA	3 cut(s)	130, 425, 467
MluCI	AATT	4 cut(s)	280, 327, 331, 458
MlyI	GAGTC	2 cut(s)	18, 427
MnlI	CCTC	4 cut(s)	25, 118, 141, 196
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	3 cut(s)	19, 164, 200
MvnI	CGCG	1 cut(s)	29
NlaIII	CATG	3 cut(s)	221, 314, 455
NlaIV	GGNNCC	2 cut(s)	230, 249
PcsI	WCGNNNNNNNCGW	3 cut(s)	80, 203, 293
PfeI	GAWTC	1 cut(s)	253
PflFI	GACNNNGTC	2 cut(s)	76, 301
PleI	GAGTC	2 cut(s)	18, 426
PpsI	GAGTC	2 cut(s)	18, 426
PshBI	ATTAAT	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	230, 249
PspPI	GGNCC	3 cut(s)	16, 248, 350
PsyI	GACNNNGTC	2 cut(s)	76, 301
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	315
SalI	GTCGAC	2 cut(s)	70, 208
SaqAI	TTAA	1 cut(s)	330
Sau96I	GGNCC	3 cut(s)	16, 248, 350
SchI	GAGTC	2 cut(s)	18, 427
SetI	ASST	6 cut(s)	77, 86, 191, 362, 411, 469
SgrDI	CGTCGACG	2 cut(s)	70, 208
SinI	GGWCC	2 cut(s)	16, 248
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	4 cut(s)	280, 327, 331, 458
SsiI	CCGC	3 cut(s)	29, 238, 428
TaaI	ACNGT	2 cut(s)	214, 447
TaiI	ACGT	2 cut(s)	77, 86
TaqI	TCGA	3 cut(s)	71, 209, 284
TasI	AATT	4 cut(s)	280, 327, 331, 458
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	450
TspDTI	ATGAA	4 cut(s)	144, 147, 183, 468
TspRI	CASTG	1 cut(s)	450
Tth111I	GACNNNGTC	2 cut(s)	76, 301
VpaK11BI	GGWCC	2 cut(s)	16, 248
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	71, 209
ZraI	GACGTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.