Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

18534161 .. 18545306

Gene Structure 11146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG194800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATGGCGTTTCTTCAGAGAGTCGCTGAGGATCCCGAGATTTTTCCACGTATGATGCTGGAGAAGGACCGGAGACTCGCGGAGGGTTTGGGGGACAAGAAGCGTCGACTGGTGATAGCGTCCATGTCGTCCACGTCATCATCGGGGATGGGGGCGACGACTTCCGTGAAGACTGTGGATGAAGTTGAAGGGACGATGGGGGTGATTTCGTCGCCGGAGATGGGTTTTGAGATGGAGAGCTTTCCTCAGGGGTCGACGTCGCCGGAGGCGTTGACGGCGCAGGGGTGGTGGAGCCAGAAGCGGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTGTACGGGGTTAGCGACGCAGTCAGGTCATGGAAATGGGAATATTAGTAATTCCAGATACGGGTTTGGCCCGTTTGGGTATAGTGGAAATAGGAGTGGTAGTGGAGAAGTGGGTTATTTTGCGGAGCTGGAAGAGAGTCCACCACCGCTTATCCATTCTCACTGTTGCATGAAGAATTTGCAGCCCCCAGTTTCTCTCCTTACCAAGTCACCATCTCGCCTCCTCAAGTCCTCCACAGCAATTCTGGGCTCGTTCTGTCTGGAGTTCTGGGCTCGTTCTCCTCCACAGCAGCAAGCGAGCAAGCCACCTCCACCTCAGTACACTCATCCGAATCTTTACGCCGGAGTGATCAGTAGCAAACATTATGAAGAGGCAATCAAAATCTGCTGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

246

Amino Acids

26.84

Weight (kDa)

8.18

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	106, 254
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	80, 301, 467, 491
AclWI	GGATC	2 cut(s)	26, 39
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	349, 665
AfiI	CCNNNNNNNGG	3 cut(s)	221, 301, 405
AgsI	TTSAA	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	135
AluBI	AGCT	2 cut(s)	240, 472
AluI	AGCT	2 cut(s)	240, 472
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	26, 39
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	3 cut(s)	526, 634, 732
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	67, 413
AsuHPI	GGTGA	3 cut(s)	124, 214, 546
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	596, 619
BbsI	GAAGAC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	538, 646, 719
BccI	CCATC	5 cut(s)	142, 190, 214, 226, 565
BceAI	ACGGC	1 cut(s)	291
BclI	TGATCA	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	739
BisI	GCNGC	3 cut(s)	527, 635, 733
BlsI	GCNGC	3 cut(s)	528, 636, 734
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	67, 413
BmiI	GGNNCC	2 cut(s)	33, 293
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	2 cut(s)	80, 626
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	554
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 301, 405
Bse1I	ACTGG	2 cut(s)	114, 533
Bse21I	CCTNAGG	1 cut(s)	246
BseGI	GGATG	3 cut(s)	153, 184, 670
BseLI	CCNNNNNNNGG	3 cut(s)	221, 301, 405
BseMII	CTCAG	3 cut(s)	18, 260, 674
BseNI	ACTGG	2 cut(s)	114, 533
BseRI	GAGGAG	2 cut(s)	557, 615
BseXI	GCAGC	3 cut(s)	538, 646, 719
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	70, 215, 263, 687
BslFI	GGGAC	2 cut(s)	107, 205
BslI	CCNNNNNNNGG	3 cut(s)	221, 301, 405
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	107, 205
BsnI	GGCC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	596, 619
Bsp143I	GATC	2 cut(s)	31, 693
BspACI	CCGC	4 cut(s)	80, 301, 467, 491
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	3 cut(s)	19, 259, 673
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	33, 293
BspPI	GGATC	2 cut(s)	26, 39
BsrI	ACTGG	2 cut(s)	114, 533
BssMI	GATC	2 cut(s)	31, 693
BssNI	GRCGYC	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	175, 509
Bst6I	CTCTTC	2 cut(s)	471, 708
BstACI	GRCGYC	1 cut(s)	257
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	639, 643, 647
BstDEI	CTNAG	3 cut(s)	27, 246, 660
BstF5I	GGATG	3 cut(s)	153, 184, 670
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	34, 696
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	2 cut(s)	31, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	538, 646, 719
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	153, 184, 670
BtsIMutI	CAGTG	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	639, 643, 647
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	67, 413
CseI	GACGC	3 cut(s)	92, 108, 370
Csp6I	GTAC	2 cut(s)	348, 664
CviAII	CATG	3 cut(s)	124, 374, 514
CviJI	RGCY	8 cut(s)	240, 294, 414, 472, 529, 594, 617, 649
CviKI_1	RGCY	8 cut(s)	240, 294, 414, 472, 529, 594, 617, 649
CviQI	GTAC	2 cut(s)	348, 664
DdeI	CTNAG	3 cut(s)	27, 246, 660
DpnI	GATC	2 cut(s)	33, 695
DpnII	GATC	2 cut(s)	31, 693
Eam1104I	CTCTTC	2 cut(s)	471, 708
EarI	CTCTTC	2 cut(s)	471, 708
Eco24I	GRGCYC	2 cut(s)	596, 619
Eco47I	GGWCC	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	35
EcoT38I	GRGCYC	2 cut(s)	596, 619
FaeI	CATG	3 cut(s)	127, 377, 517
FaiI	YATR	7 cut(s)	53, 125, 339, 375, 426, 515, 711
FaqI	GGGAC	2 cut(s)	107, 205
FatI	CATG	3 cut(s)	123, 373, 513
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	693
FblI	GTMKAC	2 cut(s)	106, 254
Fnu4HI	GCNGC	3 cut(s)	527, 635, 733
FokI	GGATG	3 cut(s)	160, 191, 657
FriOI	GRGCYC	2 cut(s)	596, 619
Fsp4HI	GCNGC	3 cut(s)	527, 635, 733
FspBI	CTAG	1 cut(s)	739
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	527, 635, 733
GsuI	CTGGAG	2 cut(s)	80, 626
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	4 cut(s)	70, 215, 263, 687
HgaI	GACGC	3 cut(s)	92, 108, 370
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	127, 377, 517
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	3 cut(s)	107, 255, 273
HindII	GTYRAC	3 cut(s)	107, 255, 273
HinfI	GANTC	5 cut(s)	21, 75, 316, 481, 676
HpaII	CCGG	4 cut(s)	70, 215, 263, 687
HphI	GGTGA	3 cut(s)	124, 214, 546
Hpy166II	GTNNAC	6 cut(s)	107, 132, 255, 273, 485, 666
Hpy188I	TCNGA	4 cut(s)	18, 315, 321, 675
Hpy188III	TCNNGA	3 cut(s)	35, 399, 605
Hpy8I	GTNNAC	6 cut(s)	107, 132, 255, 273, 485, 666
Hpy99I	CGWCG	6 cut(s)	108, 160, 214, 259, 262, 364
HpyAV	CCTTC	2 cut(s)	58, 182
HpyCH4III	ACNGT	2 cut(s)	175, 509
HpyCH4IV	ACGT	3 cut(s)	49, 134, 257
HpyCH4V	TGCA	2 cut(s)	513, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	27, 246, 660
HpySE526I	ACGT	3 cut(s)	49, 134, 257
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	127, 377, 517
HspAI	GCGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	31, 693
LmnI	GCTCC	2 cut(s)	291, 469
Lsp1109I	GCAGC	3 cut(s)	538, 646, 719
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	739
MaeII	ACGT	3 cut(s)	49, 134, 257
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	2 cut(s)	33, 695
MboI	GATC	2 cut(s)	31, 693
MboII	GAAGA	5 cut(s)	5, 181, 488, 529, 725
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	596, 619
MluCI	AATT	4 cut(s)	343, 394, 520, 585
MlyI	GAGTC	3 cut(s)	30, 69, 490
MmeI	TCCRAC	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	4 cut(s)	70, 215, 263, 687
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	31, 693
NlaIII	CATG	3 cut(s)	127, 377, 517
NlaIV	GGNNCC	2 cut(s)	33, 293
NmuCI	GTSAC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	2 cut(s)	266, 356
PfeI	GAWTC	2 cut(s)	316, 676
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	528, 636, 734
PleI	GAGTC	3 cut(s)	29, 69, 489
PpsI	GAGTC	3 cut(s)	29, 69, 489
Ppu21I	YACGTR	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	33, 293
PspPI	GGNCC	2 cut(s)	67, 413
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	2 cut(s)	349, 665
RsaNI	GTAC	2 cut(s)	348, 664
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	2 cut(s)	105, 253
SatI	GCNGC	3 cut(s)	527, 635, 733
Sau3AI	GATC	2 cut(s)	31, 693
Sau96I	GGNCC	2 cut(s)	67, 413
SchI	GAGTC	3 cut(s)	30, 69, 490
SduI	GDGCHC	2 cut(s)	596, 619
SetI	ASST	8 cut(s)	52, 137, 242, 260, 373, 474, 655, 661
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	4 cut(s)	343, 394, 520, 585
SsiI	CCGC	4 cut(s)	80, 301, 467, 491
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	739
TaaI	ACNGT	2 cut(s)	175, 509
TaiI	ACGT	3 cut(s)	52, 137, 260
TaqI	TCGA	2 cut(s)	106, 254
TasI	AATT	4 cut(s)	343, 394, 520, 585
TatI	WGTACW	1 cut(s)	663
TfiI	GAWTC	2 cut(s)	316, 676
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	3 cut(s)	526, 634, 732
Tsp45I	GTSAC	1 cut(s)	552
TspDTI	ATGAA	3 cut(s)	195, 530, 726
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	512
Tth111I	GACNNNGTC	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	2 cut(s)	106, 254
XspI	CTAG	1 cut(s)	739
ZraI	GACGTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.