Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

20253061 .. 20254779

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATGATGGAGGAGAACAACAACGTCATCGCGCCGTTCGTTATGAAGACTTACCAGATGGTCAACGATCCGACGACGGACAAGTTAATCACTTGGGGCCGAGCCAACAACAGCTTCATCGTCGTCGACCCTTTAGACTTCTCTCAGAGGCTCTTACCCGCTTACTTCAAGCACAACAATTTCTCCAGCTTTGTTCGCCAGCTCAACACATATGGATTTCGTAAGGTCGATCCAGATAGGTGGGAATTTGCGAACGAGTGTTTTCTGCGGGGCCAAACGCATTTGCTGAGGAACGTGGTGAGGAGAAAGCACATGGGTAAGAATTCGTATTCGAATTCGAATTCGAATTCGACCACGTGCTTATTACAGGGGAAGCACGAGGAGCTAGACGACGAAGAGATAGTGATGGAGATTGCGAGGTTGAAGCAGGAGCAGAAGGCGTTGGAAGAAGAAATGGAGAACATGAACAAGAGATTGGAGGCAACTGAGAGACGACCCCAGCAAATGATGGCTTTTCTGCACAAAGTCGCGGAGGACCCTGAGATTTTGCCACGTATTATGCTCGAGAAGGATCGTACGTTCAGGGCGCAGTTGGGGGAGAAGAAGCGGCGGGTTATGATGATAACCTCAACGTCGTCGTCTTCGTCGGGCATGGGGGCCACCAACTCCGTCAAGACCGAAGATGAGGATGACGGAACCGTAGGGGTAATTTCGTCATCTCCCGAACCGGGTTTTGAGATGGAGAGTTTTTATTCCACGTCTCCAGAGACGTCGACGGCGCGAGAGTGGGGGACGCAGAGGCGGGTCGTGGATCGGGTTCGGGCTGTGCAAGACCCGTATAATATGAACCCGACGGTGTCGGGTCATGTGATCGGGAATAGTAGTAATTCCGGGTACGGGTATGGGAATAGAAATGTTGGTGCGGGAGTGGGTTATCTCACAGAGGAACCTATCCCTGCACCACCGCCTTATCCATTCTCGTTGTTAGAGGGTGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

334

Amino Acids

37.85

Weight (kDa)

5.68

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	773
AccI	GTMKAC	2 cut(s)	126, 773
AccII	CGCG	3 cut(s)	32, 530, 781
AciI	CCGC	8 cut(s)	159, 268, 530, 607, 610, 802, 923, 965
AclWI	GGATC	4 cut(s)	62, 224, 579, 819
AcsI	RAATTY	5 cut(s)	245, 322, 334, 340, 346
AcvI	CACGTG	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	770
AfaI	GTAC	2 cut(s)	577, 896
AfiI	CCNNNNNNNGG	2 cut(s)	728, 897
AgsI	TTSAA	2 cut(s)	169, 424
AjiI	CACGTC	1 cut(s)	759
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 458, 490
AloI	GAACNNNNNNTCC	2 cut(s)	563, 595
AluBI	AGCT	4 cut(s)	114, 189, 202, 385
AluI	AGCT	4 cut(s)	114, 189, 202, 385
Alw26I	GTCTC	3 cut(s)	484, 761, 765
AlwI	GGATC	4 cut(s)	62, 224, 579, 819
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	97, 271, 657
ApoI	RAATTY	5 cut(s)	245, 322, 334, 340, 346
AspLEI	GCGC	3 cut(s)	34, 589, 781
AspS9I	GGNCC	4 cut(s)	97, 271, 535, 657
AsuC2I	CCSGG	2 cut(s)	729, 892
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	3 cut(s)	332, 338, 344
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	535
BauI	CACGAG	1 cut(s)	377
BbrPI	CACGTG	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	53, 633
BbvCI	CCTCAGC	1 cut(s)	287
BccI	CCATC	4 cut(s)	52, 400, 502, 733
BceAI	ACGGC	2 cut(s)	19, 792
BcnI	CCSGG	2 cut(s)	729, 892
BcoDI	GTCTC	3 cut(s)	484, 761, 765
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	608
BlsI	GCNGC	1 cut(s)	609
Bme1390I	CCNGG	2 cut(s)	729, 892
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	4 cut(s)	97, 271, 535, 657
BmiI	GGNNCC	6 cut(s)	98, 272, 537, 658, 697, 948
BmrFI	CCNGG	2 cut(s)	729, 892
BpiI	GAAGAC	2 cut(s)	53, 633
BpmI	CTGGAG	2 cut(s)	169, 747
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu14I	TTCGAA	3 cut(s)	332, 338, 344
BpuMI	CCSGG	2 cut(s)	729, 892
BsaAI	YACGTR	2 cut(s)	357, 554
BsaHI	GRCGYC	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	728, 897
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	2 cut(s)	728, 897
BseMII	CTCAG	4 cut(s)	158, 278, 477, 531
BseRI	GAGGAG	3 cut(s)	26, 316, 395
BseYI	CCCAGC	1 cut(s)	498
BsgI	GTGCAG	2 cut(s)	503, 942
Bsh1236I	CGCG	3 cut(s)	32, 530, 781
BshFI	GGCC	3 cut(s)	99, 273, 659
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	728, 891
BsiWI	CGTACG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	2 cut(s)	728, 897
BsmAI	GTCTC	3 cut(s)	484, 761, 765
BsmBI	CGTCTC	3 cut(s)	484, 761, 765
BsmFI	GGGAC	1 cut(s)	805
BsnI	GGCC	3 cut(s)	99, 273, 659
BsoBI	CYCGRG	1 cut(s)	563
Bsp119I	TTCGAA	3 cut(s)	332, 338, 344
Bsp143I	GATC	5 cut(s)	67, 229, 571, 811, 870
BspACI	CCGC	8 cut(s)	159, 268, 530, 607, 610, 802, 923, 965
BspANI	GGCC	3 cut(s)	99, 273, 659
BspCNI	CTCAG	4 cut(s)	157, 279, 478, 532
BspFNI	CGCG	3 cut(s)	32, 530, 781
BspLI	GGNNCC	6 cut(s)	98, 272, 537, 658, 697, 948
BspPI	GGATC	4 cut(s)	62, 224, 579, 819
BspT104I	TTCGAA	3 cut(s)	332, 338, 344
BssMI	GATC	5 cut(s)	67, 229, 571, 811, 870
BssNI	GRCGYC	1 cut(s)	770
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	700, 856
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	770
BstBAI	YACGTR	2 cut(s)	357, 554
BstBI	TTCGAA	3 cut(s)	332, 338, 344
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	4 cut(s)	144, 287, 486, 540
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	3 cut(s)	32, 530, 781
BstHHI	GCGC	3 cut(s)	34, 589, 781
BstKTI	GATC	5 cut(s)	70, 232, 574, 814, 873
BstMAI	GTCTC	3 cut(s)	484, 761, 765
BstMBI	GATC	5 cut(s)	67, 229, 571, 811, 870
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 382
BstSCI	CCNGG	2 cut(s)	727, 890
BstUI	CGCG	3 cut(s)	32, 530, 781
BstV2I	GAAGAC	2 cut(s)	53, 633
BstXI	CCANNNNNNTGG	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	99, 273, 659
BtgZI	GCGATG	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	3 cut(s)	34, 589, 781
Cfr13I	GGNCC	4 cut(s)	97, 271, 535, 657
CseI	GACGC	1 cut(s)	802
Csp6I	GTAC	2 cut(s)	576, 895
CviAII	CATG	4 cut(s)	313, 463, 652, 866
CviQI	GTAC	2 cut(s)	576, 895
DdeI	CTNAG	4 cut(s)	144, 287, 486, 540
DpnI	GATC	5 cut(s)	69, 231, 573, 813, 872
DpnII	GATC	5 cut(s)	67, 229, 571, 811, 870
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	535
Eco72I	CACGTG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRI	GAATTC	4 cut(s)	322, 334, 340, 346
Esp3I	CGTCTC	3 cut(s)	484, 761, 765
FaeI	CATG	4 cut(s)	316, 466, 655, 869
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	4 cut(s)	312, 462, 651, 865
FauI	CCCGC	5 cut(s)	166, 261, 603, 795, 916
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	2 cut(s)	126, 773
Fnu4HI	GCNGC	1 cut(s)	608
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	1 cut(s)	608
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	3 cut(s)	33, 588, 780
GluI	GCNGC	1 cut(s)	608
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	2 cut(s)	169, 747
HaeIII	GGCC	3 cut(s)	99, 273, 659
HapII	CCGG	2 cut(s)	728, 891
HgaI	GACGC	1 cut(s)	802
HhaI	GCGC	3 cut(s)	34, 589, 781
Hin1I	GRCGYC	1 cut(s)	770
Hin1II	CATG	4 cut(s)	316, 466, 655, 869
Hin6I	GCGC	3 cut(s)	32, 587, 779
HinP1I	GCGC	3 cut(s)	32, 587, 779
HincII	GTYRAC	3 cut(s)	64, 127, 774
HindII	GTYRAC	3 cut(s)	64, 127, 774
HpaII	CCGG	2 cut(s)	728, 891
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	64, 127, 774
Hpy188I	TCNGA	2 cut(s)	72, 147
Hpy188III	TCNNGA	6 cut(s)	233, 565, 673, 722, 764, 874
Hpy8I	GTNNAC	3 cut(s)	64, 127, 774
HpyAV	CCTTC	2 cut(s)	430, 562
HpyCH4III	ACNGT	2 cut(s)	700, 856
HpyCH4IV	ACGT	8 cut(s)	24, 294, 356, 553, 578, 632, 758, 770
HpyCH4V	TGCA	3 cut(s)	520, 829, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 382
HpyF3I	CTNAG	4 cut(s)	144, 287, 486, 540
HpySE526I	ACGT	8 cut(s)	24, 294, 356, 553, 578, 632, 758, 770
Hsp92I	GRCGYC	1 cut(s)	770
Hsp92II	CATG	4 cut(s)	316, 466, 655, 869
HspAI	GCGC	3 cut(s)	32, 587, 779
Kzo9I	GATC	5 cut(s)	67, 229, 571, 811, 870
LmnI	GCTCC	2 cut(s)	382, 430
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	8 cut(s)	24, 294, 356, 553, 578, 632, 758, 770
MalI	GATC	5 cut(s)	69, 231, 573, 813, 872
MboI	GATC	5 cut(s)	67, 229, 571, 811, 870
MboII	GAAGA	7 cut(s)	58, 407, 458, 461, 613, 633, 692
MluCI	AATT	8 cut(s)	178, 245, 322, 334, 340, 346, 708, 886
MmeI	TCCRAC	2 cut(s)	95, 423
MseI	TTAA	1 cut(s)	86
MspI	CCGG	2 cut(s)	728, 891
MspR9I	CCNGG	2 cut(s)	729, 892
MvnI	CGCG	3 cut(s)	32, 530, 781
MwoI	GCNNNNNNNGC	2 cut(s)	195, 382
NciI	CCSGG	2 cut(s)	729, 892
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	5 cut(s)	67, 229, 571, 811, 870
NlaIII	CATG	4 cut(s)	316, 466, 655, 869
NlaIV	GGNNCC	6 cut(s)	98, 272, 537, 658, 697, 948
NmeAIII	GCCGAG	1 cut(s)	125
NspV	TTCGAA	3 cut(s)	332, 338, 344
PaeR7I	CTCGAG	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 641
Pfl23II	CGTACG	1 cut(s)	575
PflFI	GACNNNGTC	1 cut(s)	856
PkrI	GCNGC	1 cut(s)	609
PmaCI	CACGTG	1 cut(s)	357
PmlI	CACGTG	1 cut(s)	357
Ppu21I	YACGTR	2 cut(s)	357, 554
PpuMI	RGGWCCY	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	535
PspCI	CACGTG	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	498
PspLI	CGTACG	1 cut(s)	575
PspN4I	GGNNCC	6 cut(s)	98, 272, 537, 658, 697, 948
PspPI	GGNCC	4 cut(s)	97, 271, 535, 657
PspPPI	RGGWCCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	856
RsaI	GTAC	2 cut(s)	577, 896
RsaNI	GTAC	2 cut(s)	576, 895
SalI	GTCGAC	2 cut(s)	125, 772
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	608
Sau3AI	GATC	5 cut(s)	67, 229, 571, 811, 870
Sau96I	GGNCC	4 cut(s)	97, 271, 535, 657
ScrFI	CCNGG	2 cut(s)	729, 892
Sfr274I	CTCGAG	1 cut(s)	563
SfuI	TTCGAA	3 cut(s)	332, 338, 344
SgrDI	CGTCGACG	1 cut(s)	772
SinI	GGWCC	1 cut(s)	535
SlaI	CTCGAG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	8 cut(s)	178, 245, 322, 334, 340, 346, 708, 886
SsiI	CCGC	8 cut(s)	159, 268, 530, 607, 610, 802, 923, 965
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	727, 890
TaaI	ACNGT	2 cut(s)	700, 856
TaiI	ACGT	8 cut(s)	27, 297, 359, 556, 581, 635, 761, 773
TaqI	TCGA	8 cut(s)	126, 228, 332, 338, 344, 350, 564, 773
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	8 cut(s)	178, 245, 322, 334, 340, 346, 708, 886
TauI	GCSGC	1 cut(s)	610
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TspDTI	ATGAA	4 cut(s)	59, 106, 479, 860
TspGWI	ACGGA	3 cut(s)	92, 658, 708
Tth111I	GACNNNGTC	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	5 cut(s)	245, 322, 334, 340, 346
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	2 cut(s)	126, 773
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.