Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

88414604 .. 88415131

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATGGCGTTTCTTCACAGAGTCGCTGAGGATCCCGAGATTTTGCCACGTATGATGCTGGAGAAGGACCGGAGACTCGCGGACGGGTTGGGGGCCAAGAAGCGTCGGCTGGTGATAGCGTCCACGTCGTCCACGTCATCATCGGGGATGGGGGCGACGGCTTCCGTGAAGACTGAGGATGAAGTTGACGGGGCGATGGGCGTGATTTCGTCGCCGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCGGGGGTCGACGTCGCCGGAGGCGTCGACGGCGCAGGGGTGGTGGAGCCAGAAGCGGCTTGTGGGTCGGTATCGGAGTGATAAGGAGTTGTTTGGTAATTCTACGGGGTTAGCGACGCAGTCGGGTCATGGAAATGAGAATAGTAGTAATTCCGGGTACGGGTTTGGCCCGTTTGGGTATAGTGGAAATAGGAGTGGTAGTGGGGAAGTGGGTTATTTTGCGGAGCTGGAAGAGAGTCCACCACCGCCTTATCCATTCTCACTGTTAGAAGGTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

175

Amino Acids

18.68

Weight (kDa)

5.13

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	254, 272
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	80, 301, 467, 491
AclWI	GGATC	2 cut(s)	26, 39
AcyI	GRCGYC	2 cut(s)	257, 269
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	221, 405
AjiI	CACGTC	2 cut(s)	126, 135
AluBI	AGCT	2 cut(s)	240, 472
AluI	AGCT	2 cut(s)	240, 472
Alw26I	GTCTC	2 cut(s)	67, 212
AlwI	GGATC	2 cut(s)	26, 39
Ama87I	CYCGRG	2 cut(s)	35, 246
AoxI	GGCC	2 cut(s)	93, 412
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	67, 93, 413
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	2 cut(s)	35, 246
AvaII	GGWCC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	3 cut(s)	142, 190, 226
BceAI	ACGGC	2 cut(s)	174, 291
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	67, 212
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	2 cut(s)	35, 246
BmgBI	CACGTC	2 cut(s)	126, 135
BmgT120I	GGNCC	3 cut(s)	67, 93, 413
BmiI	GGNNCC	3 cut(s)	33, 94, 293
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	2 cut(s)	257, 269
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 405
BseGI	GGATG	2 cut(s)	153, 184
BseLI	CCNNNNNNNGG	2 cut(s)	221, 405
BseMII	CTCAG	2 cut(s)	18, 165
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	95, 414
BsiHKCI	CYCGRG	2 cut(s)	35, 246
BsiSI	CCGG	4 cut(s)	70, 215, 263, 399
BslI	CCNNNNNNNGG	2 cut(s)	221, 405
BsmAI	GTCTC	2 cut(s)	67, 212
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	95, 414
BsoBI	CYCGRG	2 cut(s)	35, 246
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	80, 301, 467, 491
BspANI	GGCC	2 cut(s)	95, 414
BspCNI	CTCAG	2 cut(s)	19, 166
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	33, 94, 293
BspPI	GGATC	2 cut(s)	26, 39
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	2 cut(s)	257, 269
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	2 cut(s)	257, 269
BstBAI	YACGTR	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	27, 174
BstF5I	GGATG	2 cut(s)	153, 184
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	67, 212
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	398
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	95, 414
BtgZI	GCGATG	1 cut(s)	209
BtrI	CACGTC	2 cut(s)	126, 135
BtsCI	GGATG	2 cut(s)	153, 184
BtsIMutI	CAGTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	67, 93, 413
CseI	GACGC	4 cut(s)	92, 108, 258, 370
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	8 cut(s)	95, 109, 161, 240, 294, 304, 414, 472
CviKI_1	RGCY	8 cut(s)	95, 109, 161, 240, 294, 304, 414, 472
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	27, 174
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	67
Eco88I	CYCGRG	2 cut(s)	35, 246
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	377
FaiI	YATR	3 cut(s)	53, 375, 426
FatI	CATG	1 cut(s)	373
FblI	GTMKAC	2 cut(s)	254, 272
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	2 cut(s)	160, 191
Fsp4HI	GCNGC	1 cut(s)	302
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	95, 414
HapII	CCGG	4 cut(s)	70, 215, 263, 399
HgaI	GACGC	4 cut(s)	92, 108, 258, 370
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	2 cut(s)	257, 269
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	3 cut(s)	187, 255, 273
HindII	GTYRAC	3 cut(s)	187, 255, 273
HinfI	GANTC	3 cut(s)	21, 75, 481
HpaII	CCGG	4 cut(s)	70, 215, 263, 399
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	6 cut(s)	123, 132, 187, 255, 273, 485
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	6 cut(s)	123, 132, 187, 255, 273, 485
Hpy99I	CGWCG	9 cut(s)	108, 130, 160, 214, 259, 262, 274, 277, 364
HpyAV	CCTTC	2 cut(s)	58, 509
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4IV	ACGT	4 cut(s)	49, 125, 134, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	27, 174
HpySE526I	ACGT	4 cut(s)	49, 125, 134, 257
Hsp92I	GRCGYC	2 cut(s)	257, 269
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	291, 469
LpnPI	CCDG	9 cut(s)	44, 83, 95, 228, 266, 276, 308, 412, 458
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	4 cut(s)	49, 125, 134, 257
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	5, 181, 488
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	2 cut(s)	343, 394
MlyI	GAGTC	3 cut(s)	30, 69, 490
MnlI	CCTC	3 cut(s)	22, 169, 259
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	4 cut(s)	70, 215, 263, 399
MspR9I	CCNGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	3 cut(s)	33, 94, 293
PcsI	WCGNNNNNNNCGW	3 cut(s)	131, 266, 356
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	3 cut(s)	29, 69, 489
PpsI	GAGTC	3 cut(s)	29, 69, 489
Ppu21I	YACGTR	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	33, 94, 293
PspPI	GGNCC	3 cut(s)	67, 93, 413
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	2 cut(s)	253, 271
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	3 cut(s)	67, 93, 413
SchI	GAGTC	3 cut(s)	30, 69, 490
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	7 cut(s)	52, 128, 137, 242, 260, 474, 520
SfaNI	GCATC	1 cut(s)	45
SgrDI	CGTCGACG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	2 cut(s)	343, 394
SsiI	CCGC	4 cut(s)	80, 301, 467, 491
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	510
TaiI	ACGT	4 cut(s)	52, 128, 137, 260
TaqI	TCGA	2 cut(s)	254, 272
TasI	AATT	2 cut(s)	343, 394
TauI	GCSGC	1 cut(s)	304
TscAI	CASTG	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	513
Tth111I	GACNNNGTC	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	254, 272
ZraI	GACGTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.