Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

65039372 .. 65039662

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG484800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGGCGACGTCTTCCGTGAAGACTGAGGATGAAGTTGACGGGGCGATGGGGGTGATTTCGTCGCCGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCGGGGGTCGACGTCGCCGAAGGCGTTGATGGAGCAGGGGTGGTGGAGCCAGAAGCAGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTCTACGTTGGTGGGCAGGCTGCAGGCTTGCTGCGTTGGGTGGGCTGCGCAGGCGCTGGACACGGGGGCAGTAGTGCGGAGGGCGACTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

96

Amino Acids

10.2

Weight (kDa)

5.33

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	14, 113
Acc16I	TGCGCA	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	1 cut(s)	274
AcyI	GRCGYC	2 cut(s)	11, 110
AfiI	CCNNNNNNNGG	2 cut(s)	74, 154
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	217, 228, 242
AspLEI	GCGC	2 cut(s)	247, 253
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	6, 29
BbvI	GCAGC	3 cut(s)	204, 215, 229
BccI	CCATC	3 cut(s)	43, 79, 121
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	218, 229, 243
BlsI	GCNGC	3 cut(s)	219, 230, 244
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	6, 29
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BsaHI	GRCGYC	2 cut(s)	11, 110
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 154
Bse1I	ACTGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	74, 154
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	3 cut(s)	204, 215, 229
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	74, 154
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	289
BssNI	GRCGYC	2 cut(s)	11, 110
BstACI	GRCGYC	2 cut(s)	11, 110
BstC8I	GCNNGC	4 cut(s)	215, 222, 226, 249
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	247, 253
BstMAI	GTCTC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	3 cut(s)	204, 215, 229
BstV2I	GAAGAC	2 cut(s)	6, 29
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	215, 222, 226, 249
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	2 cut(s)	247, 253
CviJI	RGCY	5 cut(s)	93, 147, 217, 224, 242
CviKI_1	RGCY	5 cut(s)	93, 147, 217, 224, 242
DdeI	CTNAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	65
FaiI	YATR	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	218, 229, 243
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	218, 229, 243
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	2 cut(s)	246, 252
GluI	GCNGC	3 cut(s)	218, 229, 243
HaeII	RGCGCY	1 cut(s)	254
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	247, 253
Hin1I	GRCGYC	2 cut(s)	11, 110
Hin6I	GCGC	2 cut(s)	245, 251
HinP1I	GCGC	2 cut(s)	245, 251
HincII	GTYRAC	2 cut(s)	40, 108
HindII	GTYRAC	2 cut(s)	40, 108
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	40, 108
Hpy188I	TCNGA	2 cut(s)	168, 174
Hpy8I	GTNNAC	2 cut(s)	40, 108
Hpy99I	CGWCG	4 cut(s)	13, 67, 112, 115
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	3 cut(s)	11, 110, 203
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	3 cut(s)	11, 110, 203
Hsp92I	GRCGYC	2 cut(s)	11, 110
HspAI	GCGC	2 cut(s)	245, 251
LmnI	GCTCC	2 cut(s)	130, 144
LpnPI	CCDG	9 cut(s)	81, 119, 140, 161, 199, 206, 233, 239, 270
Lsp1109I	GCAGC	3 cut(s)	204, 215, 229
MaeII	ACGT	3 cut(s)	11, 110, 203
MboII	GAAGA	2 cut(s)	6, 34
MluCI	AATT	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	22, 270
MspI	CCGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	146
NsbI	TGCGCA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	113, 119
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	219, 230, 244
PspN4I	GGNNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	253
SalI	GTCGAC	1 cut(s)	106
SatI	GCNGC	3 cut(s)	218, 229, 243
SetI	ASST	5 cut(s)	14, 95, 113, 159, 206
SfcI	CTRYAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	274
TaiI	ACGT	3 cut(s)	14, 113, 206
TaqI	TCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	217, 228, 242
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	107
ZraI	GACGTC	2 cut(s)	12, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.