Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

4136826 .. 4137914

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAGGACAACGGCAACGTCGTCGCGCCGTTCGTTATGAAGACTTATCAGATGGTCAGCGATCCTACAACGGACAGGTTAATCGCTTGGGGGAGGGCTAACAACAGCTTCATCGTCGTCGAGCCTTTGGAGTTCTCGCAGCGGCTGTTGCCGGCTTATTTCAAGCATAATAACTTCTCGAGCTTCGTCCGGCAGCTCAATACTTATGGATTCAGGAAGGTTGATCCGGACAGGTGGGAGTTTGCGAACGAGTGGTTCCTGCGGGGGCAGACGCATTTGTTGAAGAACGTGGTGAGGAGAAAACATAATAACAACAGGGCGGTGCTGAACACGACGACGGCGTATGGGAAGTCGGAGGAGCTTGACGACGAAGAAATAGTGACGGAGATAGCGAGGCTGAGGCAGGAGCAGAGGAGCTTAGAGGAAGAGATGGAGAATATGAGCAAGAGATTGGAGGCGACGGAGAGAAGACCGCAGCAGATGATGGCGTTTCTTCACAGAATCGCTGAGGATCCCGAGATTTTGCCACGTATGATGCTGGAGAAGGACCGGAGACTCGCGGAGGCGTTGGGGGCCAAGAAGCGTCGGCTGGTGATAGCGTCCACGTCTTCCACGTCATCATCGGGGATGGGGGCGACGGCTTCCGTGAAGACTGAGGATGAAGTTGACGGGGCGATGGGCGTGATTTCGTCGCCGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCGGGGGTCGACGTCGCCGGAGGCGTCCACGGCGCAGGGGTGGTGGAGCCAGAAGCGGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTCTACGGGGTTAGCGACGCAGTCGGGTCATGGAAATGGGAATAGTAGTCATTCCGGGTACGGGTTTGGCCCGTTTGGATATAGTGGAAATAGGAGTGGTAGTGGGGAAGTGGGTTATTTTGCGGAGCTGGAAGAGAGTCCACCACCGCCTTATCCATTCTCACTGTTAGAAGGTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

335

Amino Acids

37.58

Weight (kDa)

5.83

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	11 - 100	1.9e-28	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	2 cut(s)	26, 560
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	8 cut(s)	142, 262, 320, 473, 560, 781, 947, 971
AclWI	GGATC	4 cut(s)	56, 218, 506, 519
AcyI	GRCGYC	2 cut(s)	737, 749
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	3 cut(s)	701, 781, 885
AgsI	TTSAA	2 cut(s)	163, 283
AjiI	CACGTC	2 cut(s)	606, 615
AluBI	AGCT	7 cut(s)	108, 183, 196, 361, 417, 720, 952
AluI	AGCT	7 cut(s)	108, 183, 196, 361, 417, 720, 952
Alw26I	GTCTC	2 cut(s)	547, 692
AlwI	GGATC	4 cut(s)	56, 218, 506, 519
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	3 cut(s)	178, 515, 726
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	573, 892
ApeKI	GCWGC	3 cut(s)	139, 193, 475
AspLEI	GCGC	2 cut(s)	28, 760
AspS9I	GGNCC	3 cut(s)	547, 573, 893
AsuC2I	CCSGG	1 cut(s)	880
AsuHPI	GGTGA	2 cut(s)	304, 604
AvaI	CYCGRG	3 cut(s)	178, 515, 726
AvaII	GGWCC	1 cut(s)	547
BamHI	GGATCC	1 cut(s)	511
BbsI	GAAGAC	4 cut(s)	47, 475, 600, 656
BbvCI	CCTCAGC	2 cut(s)	398, 507
BbvI	GCAGC	3 cut(s)	151, 205, 487
BccI	CCATC	6 cut(s)	46, 424, 478, 622, 670, 706
BceAI	ACGGC	5 cut(s)	13, 28, 354, 654, 771
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcnI	CCSGG	1 cut(s)	880
BcoDI	GTCTC	2 cut(s)	547, 692
BisI	GCNGC	4 cut(s)	140, 143, 194, 476
BlsI	GCNGC	4 cut(s)	141, 144, 195, 477
Bme1390I	CCNGG	1 cut(s)	880
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	3 cut(s)	178, 515, 726
BmgBI	CACGTC	2 cut(s)	606, 615
BmgT120I	GGNCC	3 cut(s)	547, 573, 893
BmiI	GGNNCC	4 cut(s)	257, 513, 574, 773
BmrFI	CCNGG	1 cut(s)	880
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	4 cut(s)	47, 475, 600, 656
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	2 cut(s)	398, 507
BpuMI	CCSGG	1 cut(s)	880
BsaAI	YACGTR	1 cut(s)	530
BsaHI	GRCGYC	2 cut(s)	737, 749
BsaJI	CCNNGG	1 cut(s)	753
BsaWI	WCCGGW	2 cut(s)	226, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	910, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	701, 781, 885
Bse118I	RCCGGY	1 cut(s)	151
BseAI	TCCGGA	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	2 cut(s)	633, 664
BseLI	CCNNNNNNNGG	3 cut(s)	701, 781, 885
BseMII	CTCAG	3 cut(s)	389, 498, 645
BseRI	GAGGAG	3 cut(s)	310, 371, 427
BseXI	GCAGC	3 cut(s)	151, 205, 487
Bsh1236I	CGCG	2 cut(s)	26, 560
BshFI	GGCC	2 cut(s)	575, 894
BsiHKCI	CYCGRG	3 cut(s)	178, 515, 726
BsiSI	CCGG	7 cut(s)	152, 190, 227, 550, 695, 743, 879
BslI	CCNNNNNNNGG	3 cut(s)	701, 781, 885
BsmAI	GTCTC	2 cut(s)	547, 692
BsmBI	CGTCTC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	575, 894
BsoBI	CYCGRG	3 cut(s)	178, 515, 726
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	61, 223, 511
BspACI	CCGC	8 cut(s)	142, 262, 320, 473, 560, 781, 947, 971
BspANI	GGCC	2 cut(s)	575, 894
BspCNI	CTCAG	3 cut(s)	390, 499, 646
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	26, 560
BspLI	GGNNCC	4 cut(s)	257, 513, 574, 773
BspPI	GGATC	4 cut(s)	56, 218, 506, 519
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	3 cut(s)	61, 223, 511
BssNI	GRCGYC	2 cut(s)	737, 749
Bst4CI	ACNGT	1 cut(s)	990
Bst6I	CTCTTC	2 cut(s)	420, 951
BstACI	GRCGYC	2 cut(s)	737, 749
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	398, 418, 507, 654
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	633, 664
BstFNI	CGCG	2 cut(s)	26, 560
BstHHI	GCGC	2 cut(s)	28, 760
BstKTI	GATC	3 cut(s)	64, 226, 514
BstMAI	GTCTC	2 cut(s)	547, 692
BstMBI	GATC	3 cut(s)	61, 223, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 572, 755
BstSCI	CCNGG	1 cut(s)	878
BstUI	CGCG	2 cut(s)	26, 560
BstV1I	GCAGC	3 cut(s)	151, 205, 487
BstV2I	GAAGAC	4 cut(s)	47, 475, 600, 656
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	575, 894
BtgI	CCRYGG	1 cut(s)	753
BtgZI	GCGATG	1 cut(s)	689
BtrI	CACGTC	2 cut(s)	606, 615
BtsCI	GGATG	2 cut(s)	633, 664
BtsIMutI	CAGTG	1 cut(s)	986
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	28, 760
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	547, 573, 893
CseI	GACGC	5 cut(s)	280, 572, 588, 738, 850
Csp6I	GTAC	1 cut(s)	883
CviAII	CATG	1 cut(s)	854
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	4 cut(s)	398, 418, 507, 654
DpnI	GATC	3 cut(s)	63, 225, 513
DpnII	GATC	3 cut(s)	61, 223, 511
Eam1104I	CTCTTC	2 cut(s)	420, 951
EarI	CTCTTC	2 cut(s)	420, 951
Eco47I	GGWCC	1 cut(s)	547
Eco88I	CYCGRG	3 cut(s)	178, 515, 726
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	1 cut(s)	857
FatI	CATG	1 cut(s)	853
FauI	CCCGC	2 cut(s)	255, 774
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	4 cut(s)	140, 143, 194, 476
FokI	GGATG	2 cut(s)	640, 671
Fsp4HI	GCNGC	4 cut(s)	140, 143, 194, 476
GlaI	GCGC	2 cut(s)	27, 759
GluI	GCNGC	4 cut(s)	140, 143, 194, 476
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	575, 894
HapII	CCGG	7 cut(s)	152, 190, 227, 550, 695, 743, 879
HgaI	GACGC	5 cut(s)	280, 572, 588, 738, 850
HhaI	GCGC	2 cut(s)	28, 760
Hin1I	GRCGYC	2 cut(s)	737, 749
Hin1II	CATG	1 cut(s)	857
Hin6I	GCGC	2 cut(s)	26, 758
HinP1I	GCGC	2 cut(s)	26, 758
HincII	GTYRAC	2 cut(s)	667, 735
HindII	GTYRAC	2 cut(s)	667, 735
HinfI	GANTC	5 cut(s)	210, 501, 555, 796, 961
HpaII	CCGG	7 cut(s)	152, 190, 227, 550, 695, 743, 879
HphI	GGTGA	2 cut(s)	304, 604
Hpy166II	GTNNAC	5 cut(s)	603, 667, 735, 753, 965
Hpy188I	TCNGA	4 cut(s)	51, 355, 795, 801
Hpy188III	TCNNGA	4 cut(s)	178, 214, 227, 515
Hpy8I	GTNNAC	5 cut(s)	603, 667, 735, 753, 965
HpyAV	CCTTC	3 cut(s)	211, 538, 989
HpyCH4III	ACNGT	1 cut(s)	990
HpyCH4IV	ACGT	6 cut(s)	18, 288, 529, 605, 614, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 572, 755
HpyF3I	CTNAG	4 cut(s)	398, 418, 507, 654
HpySE526I	ACGT	6 cut(s)	18, 288, 529, 605, 614, 737
Hsp92I	GRCGYC	2 cut(s)	737, 749
Hsp92II	CATG	1 cut(s)	857
HspAI	GCGC	2 cut(s)	26, 758
Kpn2I	TCCGGA	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	61, 223, 511
LmnI	GCTCC	5 cut(s)	358, 406, 414, 771, 949
Lsp1109I	GCAGC	3 cut(s)	151, 205, 487
LweI	GCATC	1 cut(s)	525
MaeII	ACGT	6 cut(s)	18, 288, 529, 605, 614, 737
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	63, 225, 513
MboI	GATC	3 cut(s)	61, 223, 511
MboII	GAAGA	9 cut(s)	52, 295, 383, 437, 480, 485, 600, 661, 968
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	549, 970
MmeI	TCCRAC	2 cut(s)	333, 773
MroI	TCCGGA	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	151
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	7 cut(s)	152, 190, 227, 550, 695, 743, 879
MspR9I	CCNGG	1 cut(s)	880
MvnI	CGCG	2 cut(s)	26, 560
MwoI	GCNNNNNNNGC	3 cut(s)	148, 572, 755
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	880
NdeII	GATC	3 cut(s)	61, 223, 511
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	857
NlaIV	GGNNCC	4 cut(s)	257, 513, 574, 773
NmuCI	GTSAC	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	7 cut(s)	18, 30, 338, 389, 611, 746, 836
PdiI	GCCGGC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	210, 501, 796
PflFI	GACNNNGTC	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	141, 144, 195, 477
PleI	GAGTC	2 cut(s)	549, 969
PpsI	GAGTC	2 cut(s)	549, 969
Ppu21I	YACGTR	1 cut(s)	530
PspN4I	GGNNCC	4 cut(s)	257, 513, 574, 773
PspPI	GGNCC	3 cut(s)	547, 573, 893
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	511
PsyI	GACNNNGTC	1 cut(s)	844
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	1 cut(s)	858
SalI	GTCGAC	1 cut(s)	733
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	4 cut(s)	140, 143, 194, 476
Sau3AI	GATC	3 cut(s)	61, 223, 511
Sau96I	GGNCC	3 cut(s)	547, 573, 893
SchI	GAGTC	2 cut(s)	549, 970
ScrFI	CCNGG	1 cut(s)	880
SfaNI	GCATC	1 cut(s)	525
Sfr274I	CTCGAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	823
SsiI	CCGC	8 cut(s)	142, 262, 320, 473, 560, 781, 947, 971
StyD4I	CCNGG	1 cut(s)	878
TaaI	ACNGT	1 cut(s)	990
TaiI	ACGT	6 cut(s)	21, 291, 532, 608, 617, 740
TaqI	TCGA	3 cut(s)	120, 179, 734
TasI	AATT	1 cut(s)	823
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	210, 501, 796
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	993
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	139, 193, 475
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	53, 100, 675
TspGWI	ACGGA	4 cut(s)	86, 398, 476, 634
TspRI	CASTG	1 cut(s)	993
Tth111I	GACNNNGTC	1 cut(s)	844
VpaK11BI	GGWCC	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	734
ZraI	GACGTC	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.