Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033309.1

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

762 .. 3889

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtcatcatcggggatgggggcgacggcttccgtgaagactgaggatgaagttgacggggcgatgggggtgatttcgtcgccggagacgggttttgagatggagagcttttctcgggggtcgacagcgcaggggtggtggagccagaagcgggttgtgggtcggaatcggagtgataaggaattgtatggtaattctatggggttagcgacgcagtcgggtaatggaaatagaaatattagtaattacgggtacgggtttggcctgtttgggtatagtggaaataggagtggtagtggagaagtgggttattttgcgaagctggaagagagttcaccaccgccttatccattctcactgttgcatgaagaatttgcagggtggcgagcccttccccggtcgtcaaacgggcctttatcgaccccgtgtgggtctggtgcgagactgggctccttgatagatcagattggggagattgcggtggctgccagtgaggtgaaggagagggatatcgcggaggttggctgggattggttcgctaattgcatgcctgaccggcggggtggtgtgctgttgcagattcggaggaggtttgattgggacgaggttggtgcggcgtggcgtggctcggatcagattgttccgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

216

Amino Acids

23.31

Weight (kDa)

5.05

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	515
AciI	CCGC	6 cut(s)	151, 341, 479, 515, 559, 614
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	89, 151, 396, 429
AluBI	AGCT	2 cut(s)	108, 322
AluI	AGCT	2 cut(s)	108, 322
Alw26I	GTCTC	2 cut(s)	80, 436
AlwI	GGATC	1 cut(s)	639
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	262, 410
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	82, 327, 508
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	391, 452
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	3 cut(s)	10, 58, 94
BceAI	ACGGC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	80, 436
BfaI	CTAG	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	556
BisI	GCNGC	2 cut(s)	486, 615
BlsI	GCNGC	2 cut(s)	487, 616
Bme1390I	CCNGG	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	143, 451
BmrFI	CCNGG	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpuMI	CCSGG	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 151, 396, 429
Bse118I	RCCGGY	1 cut(s)	555
Bse1I	ACTGG	2 cut(s)	450, 489
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	21, 52
BseLI	CCNNNNNNNGG	4 cut(s)	89, 151, 396, 429
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	450, 489
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	472
BseYI	CCCAGC	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	264, 412
BsiEI	CGRYCG	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	83, 397, 556
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	4 cut(s)	89, 151, 396, 429
BsmAI	GTCTC	2 cut(s)	80, 436
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	264, 412
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	391, 452
Bsp143I	GATC	3 cut(s)	460, 631, 645
BspACI	CCGC	6 cut(s)	151, 341, 479, 515, 559, 614
BspANI	GGCC	2 cut(s)	264, 412
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	143, 451
BspPI	GGATC	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	450, 489
BssAI	RCCGGY	1 cut(s)	555
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	460, 631, 645
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	387, 548
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	21, 52
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	463, 634, 648
BstMAI	GTCTC	2 cut(s)	80, 436
BstMBI	GATC	3 cut(s)	460, 631, 645
BstMCI	CGRYCG	1 cut(s)	401
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 556
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	264, 412
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	21, 52
BtsIMutI	CAGTG	2 cut(s)	356, 496
Cac8I	GCNNGC	2 cut(s)	387, 548
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	365, 547
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	3 cut(s)	462, 633, 647
DpnII	GATC	3 cut(s)	460, 631, 645
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	391, 452
Eco32I	GATATC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	511
EcoT38I	GRGCYC	2 cut(s)	391, 452
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	368, 550
FaiI	YATR	5 cut(s)	189, 200, 276, 366, 548
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	2 cut(s)	364, 546
FauI	CCCGC	2 cut(s)	144, 552
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	486, 615
FokI	GGATG	2 cut(s)	28, 59
FriOI	GRGCYC	2 cut(s)	391, 452
Fsp4HI	GCNGC	2 cut(s)	486, 615
FspBI	CTAG	1 cut(s)	649
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	486, 615
GsaI	CCCAGC	1 cut(s)	529
HaeIII	GGCC	2 cut(s)	264, 412
HapII	CCGG	3 cut(s)	83, 397, 556
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	368, 550
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	2 cut(s)	55, 123
HindII	GTYRAC	2 cut(s)	55, 123
HinfI	GANTC	2 cut(s)	166, 580
HpaII	CCGG	3 cut(s)	83, 397, 556
HphI	GGTGA	3 cut(s)	82, 327, 508
Hpy166II	GTNNAC	3 cut(s)	55, 123, 335
Hpy188I	TCNGA	7 cut(s)	165, 171, 465, 585, 631, 636, 645
Hpy8I	GTNNAC	3 cut(s)	55, 123, 335
Hpy99I	CGWCG	3 cut(s)	28, 82, 214
HpyAV	CCTTC	2 cut(s)	401, 493
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	364, 377, 546, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 556
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	368, 550
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	3 cut(s)	460, 631, 645
LmnI	GCTCC	2 cut(s)	141, 455
Lsp1109I	GCAGC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	649
MalI	GATC	3 cut(s)	462, 633, 647
MboI	GATC	3 cut(s)	460, 631, 645
MboII	GAAGA	3 cut(s)	49, 338, 380
MhlI	GDGCHC	2 cut(s)	391, 452
MluCI	AATT	5 cut(s)	182, 193, 244, 371, 541
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	7 cut(s)	37, 487, 498, 511, 579, 582, 598
MspI	CCGG	3 cut(s)	83, 397, 556
MspR9I	CCNGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	485, 556
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	460, 631, 645
NlaIII	CATG	2 cut(s)	368, 550
NlaIV	GGNNCC	2 cut(s)	143, 451
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	166, 580
PflFI	GACNNNGTC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	487, 616
PspFI	CCCAGC	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	143, 451
PspPI	GGNCC	1 cut(s)	410
PsyI	GACNNNGTC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SalI	GTCGAC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	486, 615
Sau3AI	GATC	3 cut(s)	460, 631, 645
Sau96I	GGNCC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	391, 452
SetI	ASST	6 cut(s)	110, 324, 498, 522, 593, 609
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	5 cut(s)	182, 193, 244, 371, 541
SsiI	CCGC	6 cut(s)	151, 341, 479, 515, 559, 614
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	122, 419
TasI	AATT	5 cut(s)	182, 193, 244, 371, 541
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	2 cut(s)	166, 580
TscAI	CASTG	2 cut(s)	363, 496
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	63, 381
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	363, 496
Tth111I	GACNNNGTC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.