Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

16782615 .. 16783145

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGTTTCTTCAGAGAGTCGCTGAGGATCCCGAGATTTTGCCACGTATGATGCTGGAGAAGGACCGGAGACTCGCGGGGGGTTTGGGGGACAAGAAGCGTCGGCTGGTGATAGCGTCCACGTCGTCCACGTCATCATCGGGGATGGGGGCGACGGCTTCCGCCAAGACTGAGGATGAAGTTGACGGGGCGATAGGGGTGATTTCGTCGACGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCAGGGGTCGACGTCGCCGGAGGCGTTGACGGCACAGGGGTGGTGGAGCCAGAAGCGGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTCTACGGGGTTAGCGACGCAGTCGGGTCATGGAAATGGGAATATTAGTAATTCCGGGTACGGGTTTGGCCCGTTTAGGTATAGTGGAAATAGGAGTGGTAGTGGAGAAGTGGGTTATTTTGCGGAGTTGGAAGAGAGTCCACCACCGCCTTATCCATTCTCACTGTTGCATGAAGAATTTGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

176

Amino Acids

18.77

Weight (kDa)

5.13

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	515
AccI	GTMKAC	2 cut(s)	209, 251
AccII	CGCG	1 cut(s)	77
AciI	CCGC	5 cut(s)	77, 162, 298, 464, 488
AclWI	GGATC	2 cut(s)	23, 36
AcsI	RAATTY	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	298, 402
AjiI	CACGTC	2 cut(s)	123, 132
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	64, 209
AlwI	GGATC	2 cut(s)	23, 36
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	64, 410
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	121, 211
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	139, 223
BceAI	ACGGC	2 cut(s)	171, 288
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	64, 209
BfuAI	ACCTGC	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	32
BmgBI	CACGTC	2 cut(s)	123, 132
BmgT120I	GGNCC	2 cut(s)	64, 410
BmiI	GGNNCC	2 cut(s)	30, 290
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	397
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 402
BseGI	GGATG	2 cut(s)	150, 181
BseLI	CCNNNNNNNGG	2 cut(s)	298, 402
BseMII	CTCAG	3 cut(s)	15, 162, 257
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	67, 260, 396
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	298, 402
BsmAI	GTCTC	2 cut(s)	64, 209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	5 cut(s)	77, 162, 298, 464, 488
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	3 cut(s)	16, 163, 256
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	30, 290
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	23, 36
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	24, 171, 243
BstF5I	GGATG	2 cut(s)	150, 181
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	2 cut(s)	64, 209
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	411
BtrI	CACGTC	2 cut(s)	123, 132
BtsCI	GGATG	2 cut(s)	150, 181
BtsIMutI	CAGTG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	515
Cfr13I	GGNCC	2 cut(s)	64, 410
CseI	GACGC	3 cut(s)	89, 105, 367
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	2 cut(s)	371, 512
CviJI	RGCY	5 cut(s)	106, 158, 237, 291, 411
CviKI_1	RGCY	5 cut(s)	106, 158, 237, 291, 411
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	24, 171, 243
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	374, 515
FaiI	YATR	5 cut(s)	50, 336, 372, 423, 513
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	2 cut(s)	370, 511
FauI	CCCGC	2 cut(s)	70, 291
FblI	GTMKAC	2 cut(s)	209, 251
FokI	GGATG	2 cut(s)	157, 188
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	3 cut(s)	67, 260, 396
HgaI	GACGC	3 cut(s)	89, 105, 367
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	374, 515
HincII	GTYRAC	4 cut(s)	184, 210, 252, 270
HindII	GTYRAC	4 cut(s)	184, 210, 252, 270
HinfI	GANTC	4 cut(s)	18, 72, 313, 478
HpaII	CCGG	3 cut(s)	67, 260, 396
HphI	GGTGA	2 cut(s)	121, 211
Hpy166II	GTNNAC	7 cut(s)	120, 129, 184, 210, 252, 270, 482
Hpy188I	TCNGA	3 cut(s)	15, 312, 318
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	7 cut(s)	120, 129, 184, 210, 252, 270, 482
Hpy99I	CGWCG	8 cut(s)	105, 127, 157, 211, 214, 256, 259, 361
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	4 cut(s)	46, 122, 131, 254
HpyCH4V	TGCA	2 cut(s)	511, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	24, 171, 243
HpySE526I	ACGT	4 cut(s)	46, 122, 131, 254
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	374, 515
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	41, 80, 92, 230, 263, 273, 305, 409, 510
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	4 cut(s)	46, 122, 131, 254
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	485, 527
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	3 cut(s)	340, 391, 518
MlyI	GAGTC	3 cut(s)	27, 66, 487
MmeI	TCCRAC	2 cut(s)	290, 450
MnlI	CCTC	3 cut(s)	19, 166, 256
MslI	CAYNNNNRTG	2 cut(s)	280, 375
MspI	CCGG	3 cut(s)	67, 260, 396
MspR9I	CCNGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	374, 515
NlaIV	GGNNCC	2 cut(s)	30, 290
OliI	CACNNNNGTG	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	3 cut(s)	128, 263, 353
PfeI	GAWTC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	361
PleI	GAGTC	3 cut(s)	26, 66, 486
PpsI	GAGTC	3 cut(s)	26, 66, 486
Ppu21I	YACGTR	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	30, 290
PspPI	GGNCC	2 cut(s)	64, 410
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	280, 375
SalI	GTCGAC	2 cut(s)	208, 250
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	2 cut(s)	64, 410
SchI	GAGTC	3 cut(s)	27, 66, 487
ScrFI	CCNGG	1 cut(s)	397
SetI	ASST	7 cut(s)	49, 125, 134, 239, 257, 422, 529
SfaNI	GCATC	1 cut(s)	42
SgrDI	CGTCGACG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	280, 375
Sse9I	AATT	3 cut(s)	340, 391, 518
SsiI	CCGC	5 cut(s)	77, 162, 298, 464, 488
SspI	AATATT	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	4 cut(s)	49, 125, 134, 257
TaqI	TCGA	2 cut(s)	209, 251
TasI	AATT	3 cut(s)	340, 391, 518
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	192, 528
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	510
Tth111I	GACNNNGTC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	518
XmiI	GTMKAC	2 cut(s)	209, 251
ZraI	GACGTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.