Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

43113364 .. 43113877

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGTTGCTTCAGAGAGTCGCTGAGGATCCCGAGATTTTGCCACGTATGATGCTGGAGAAGGACCGGAGACTCGCGGAGGGTTTTGGGGGACAAGAAGCGTCGGCTGGTGATAGCGTCCACTCGCCGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCGGGGGTCGACGGCGCAGGGGTGGTGGAGCCAGAAGCGGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTCTACGGGGTTAGCGACGCAGTCGGATCATGGAAATGGGAATATTAGTAATTCCGGGTACGGGTTTGGCCCGTTTGGGTATAGTGGAAATAGGAGTGGTAGTGGAGAAGTGGGTTATTTTGCGGAGCTGGAAGAGAGTCCACCACCGCCTTATCCATTCTCACTGTTGCATGAAGAATTTGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

4.83

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	1 cut(s)	77
AciI	CCGC	4 cut(s)	77, 196, 362, 386
AclWI	GGATC	3 cut(s)	23, 36, 273
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	4 cut(s)	127, 134, 196, 300
AluBI	AGCT	2 cut(s)	153, 367
AluI	AGCT	2 cut(s)	153, 367
Alw26I	GTCTC	2 cut(s)	64, 125
AlwI	GGATC	3 cut(s)	23, 36, 273
Ama87I	CYCGRG	2 cut(s)	32, 159
AoxI	GGCC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	64, 308
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	2 cut(s)	32, 159
AvaII	GGWCC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	64, 125
BfuAI	ACCTGC	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	2 cut(s)	32, 159
BmgT120I	GGNCC	2 cut(s)	64, 308
BmiI	GGNNCC	2 cut(s)	30, 188
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 134, 196, 300
BseLI	CCNNNNNNNGG	4 cut(s)	127, 134, 196, 300
BseMII	CTCAG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	309
BsiHKCI	CYCGRG	2 cut(s)	32, 159
BsiSI	CCGG	3 cut(s)	67, 128, 294
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	127, 134, 196, 300
BsmAI	GTCTC	2 cut(s)	64, 125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	2 cut(s)	32, 159
Bsp143I	GATC	2 cut(s)	28, 265
BspACI	CCGC	4 cut(s)	77, 196, 362, 386
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	30, 188
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	3 cut(s)	23, 36, 273
BssMI	GATC	2 cut(s)	28, 265
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	31, 268
BstMAI	GTCTC	2 cut(s)	64, 125
BstMBI	GATC	2 cut(s)	28, 265
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	401
BveI	ACCTGC	1 cut(s)	413
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	64, 308
CseI	GACGC	3 cut(s)	90, 106, 265
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	269, 410
CviJI	RGCY	5 cut(s)	107, 153, 189, 309, 367
CviKI_1	RGCY	5 cut(s)	107, 153, 189, 309, 367
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	30, 267
DpnII	GATC	2 cut(s)	28, 265
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	2 cut(s)	32, 159
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	272, 413
FaiI	YATR	5 cut(s)	50, 234, 270, 321, 411
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	268, 409
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	167
GlaI	GCGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	3 cut(s)	67, 128, 294
HgaI	GACGC	3 cut(s)	90, 106, 265
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	272, 413
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	4 cut(s)	18, 72, 211, 376
HpaII	CCGG	3 cut(s)	67, 128, 294
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	121, 168, 380
Hpy188I	TCNGA	4 cut(s)	15, 210, 216, 265
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	3 cut(s)	121, 168, 380
Hpy99I	CGWCG	3 cut(s)	106, 172, 259
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	409, 422
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	272, 413
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	28, 265
LmnI	GCTCC	2 cut(s)	186, 364
LpnPI	CCDG	9 cut(s)	41, 80, 93, 141, 161, 203, 307, 353, 408
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	30, 267
MboI	GATC	2 cut(s)	28, 265
MboII	GAAGA	2 cut(s)	383, 425
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	3 cut(s)	238, 289, 416
MlyI	GAGTC	3 cut(s)	27, 66, 385
MmeI	TCCRAC	2 cut(s)	188, 243
MnlI	CCTC	2 cut(s)	19, 73
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	3 cut(s)	67, 128, 294
MspR9I	CCNGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	77
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	28, 265
NlaIII	CATG	2 cut(s)	272, 413
NlaIV	GGNNCC	2 cut(s)	30, 188
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	259
PleI	GAGTC	3 cut(s)	26, 66, 384
PpsI	GAGTC	3 cut(s)	26, 66, 384
Ppu21I	YACGTR	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	30, 188
PspPI	GGNCC	2 cut(s)	64, 308
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	259
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	28, 265
Sau96I	GGNCC	2 cut(s)	64, 308
SchI	GAGTC	3 cut(s)	27, 66, 385
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	4 cut(s)	49, 155, 369, 427
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	238, 289, 416
SsiI	CCGC	4 cut(s)	77, 196, 362, 386
SspI	AATATT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	238, 289, 416
TfiI	GAWTC	1 cut(s)	211
TscAI	CASTG	1 cut(s)	408
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.