Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Reverse (-)

3963546 .. 3964736

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAAACGAACACATCACACGGAGGAGAGCAGCAGCACCGCCAGTTGGTTCAGAATCCAAGAGCTGCTTCTTCTTCAGAAAAGCCCATGGAGGACAACGGCAACGTCATCGCGCCGTTCGTTATGAAGACCTATCAGATGGTCAGCGATCCTATAACGGACAGGTTAATCGCTTGGGGGAGGGCTAACAACAGCTTCATCGTCGTCGAGCCTTTGGAGTTCTCGCAGCGGCTGTTGCCGGCTTATTTCAAGCATAATAACTTCTCGAGCTTCGTCCGCCAGCTCAATACTTATGGATTCAGGAAGGTTGATCCGGACAGGTGGGAGTTTGCGAACGAATGGTTCCTGAGGGGGCAGACGCATTTGTTGAAGAACGTGGTGAGGAGAAAACATAATAACAACCGGACGGTGCTCAACACGACGACGGCGTATGGGAAGTCGGAGGAGCTTGACGACGAAGAAATAGTGACGGAGATAGCGAGGCTGAAGCAGGAGCAGAGGAGCTTAGAGGAAGAGGTGGAGAATATGAGCAAGAGATTGGAGGCGACGGAGAGAAGACCGCAGCAGATGATGGCGTTTCTTCACAGAGTCGCCGAGGATCCCGAGATTTTGCCACGTATGATGCTGGAGAAGGGCCGGAGACTCGCGGAGGGGTTGGGGGACAAGAAGCGTCGGCTGGTGATAGCGTCGACGTCGTCCACGTCATCATCGGGGATGGGGGCGACGGCTTCCGTGAAGACTGAGGATGAAGTTGACGGGGCGATGGGGGTGATTTCGTCGCCGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCGGAGGTCGACGTCGCCGGAGGCGTCGACGGCGCAGGGTTGGTGGAGTCAGAAGCGGGTTGTGGGTCGGAATCGGAGTTATAAGGAGTTGTATGGCAATTCTACGGGGTTGGCGACGCAGTCGGGTCATGGAAATGGGAATAGTAGTAATTCCGGGCACGGGTTTGGCCCGTTTGGGTATAGTGGAAATAGGAGTGGTAGTGGAGAAGTGGGTTATTTTGCGGAGCTGGAAGAGAGTCCACCACCGCCTTATCCATTCTCACTGTTAGAAGGTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

365

Amino Acids

40.82

Weight (kDa)

6.75

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	40 - 129	6.2e-28	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AatII	GACGTC	2 cut(s)	695, 827
AccI	GTMKAC	3 cut(s)	689, 821, 839
AccII	CGCG	2 cut(s)	113, 647
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	8 cut(s)	40, 229, 277, 560, 647, 868, 1034, 1058
AclWI	GGATC	4 cut(s)	143, 305, 593, 606
AcuI	CTGAAG	2 cut(s)	60, 506
AcyI	GRCGYC	3 cut(s)	692, 824, 836
AfiI	CCNNNNNNNGG	3 cut(s)	46, 788, 972
AgsI	TTSAA	2 cut(s)	250, 370
AjiI	CACGTC	1 cut(s)	702
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	8 cut(s)	65, 195, 270, 283, 448, 504, 807, 1039
AluI	AGCT	8 cut(s)	65, 195, 270, 283, 448, 504, 807, 1039
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	634, 779
AlwI	GGATC	4 cut(s)	143, 305, 593, 606
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	2 cut(s)	265, 602
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	634, 979
ApeKI	GCWGC	5 cut(s)	31, 34, 65, 226, 562
AspLEI	GCGC	2 cut(s)	115, 847
AspS9I	GGNCC	2 cut(s)	634, 980
AsuC2I	CCSGG	1 cut(s)	967
AsuHPI	GGTGA	3 cut(s)	391, 691, 781
AvaI	CYCGRG	2 cut(s)	265, 602
AxyI	CCTNAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	972
BamHI	GGATCC	1 cut(s)	598
BbsI	GAAGAC	3 cut(s)	134, 562, 743
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	5 cut(s)	43, 46, 52, 238, 574
BccI	CCATC	5 cut(s)	133, 565, 709, 757, 793
BceAI	ACGGC	5 cut(s)	100, 115, 441, 741, 858
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BcnI	CCSGG	1 cut(s)	967
BcoDI	GTCTC	2 cut(s)	634, 779
BisI	GCNGC	6 cut(s)	32, 35, 66, 227, 230, 563
BlsI	GCNGC	6 cut(s)	33, 36, 67, 228, 231, 564
Bme1390I	CCNGG	1 cut(s)	967
BmeT110I	CYCGRG	2 cut(s)	265, 602
BmgBI	CACGTC	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	634, 980
BmiI	GGNNCC	2 cut(s)	344, 600
BmrFI	CCNGG	1 cut(s)	967
BmsI	GCATC	1 cut(s)	612
BpiI	GAAGAC	3 cut(s)	134, 562, 743
BplI	GAGNNNNNCTC	2 cut(s)	796, 828
BpmI	CTGGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	967
BsaAI	YACGTR	1 cut(s)	617
BsaHI	GRCGYC	3 cut(s)	692, 824, 836
BsaJI	CCNNGG	2 cut(s)	87, 594
BsaWI	WCCGGW	2 cut(s)	313, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	997, 1027
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 788, 972
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	87, 594
BseGI	GGATG	2 cut(s)	720, 751
BseLI	CCNNNNNNNGG	3 cut(s)	46, 788, 972
BseMII	CTCAG	2 cut(s)	338, 732
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	4 cut(s)	39, 397, 458, 514
BseSI	GKGCMC	1 cut(s)	972
BseXI	GCAGC	5 cut(s)	43, 46, 52, 238, 574
Bsh1236I	CGCG	2 cut(s)	113, 647
BshFI	GGCC	2 cut(s)	636, 981
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	2 cut(s)	265, 602
BsiSI	CCGG	7 cut(s)	239, 314, 403, 637, 782, 830, 966
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	46, 788, 972
BsmAI	GTCTC	2 cut(s)	634, 779
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	636, 981
BsoBI	CYCGRG	2 cut(s)	265, 602
Bsp1286I	GDGCHC	2 cut(s)	414, 972
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	148, 310, 598
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	8 cut(s)	40, 229, 277, 560, 647, 868, 1034, 1058
BspANI	GGCC	2 cut(s)	636, 981
BspCNI	CTCAG	2 cut(s)	339, 733
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	113, 647
BspLI	GGNNCC	2 cut(s)	344, 600
BspPI	GGATC	4 cut(s)	143, 305, 593, 606
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	87, 594
BssMI	GATC	3 cut(s)	148, 310, 598
BssNI	GRCGYC	3 cut(s)	692, 824, 836
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	409, 1077
Bst6I	CTCTTC	2 cut(s)	507, 1038
BstACI	GRCGYC	3 cut(s)	692, 824, 836
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	240, 281
BstDEI	CTNAG	3 cut(s)	347, 505, 741
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	720, 751
BstFNI	CGCG	2 cut(s)	113, 647
BstHHI	GCGC	2 cut(s)	115, 847
BstKTI	GATC	3 cut(s)	151, 313, 601
BstMAI	GTCTC	2 cut(s)	634, 779
BstMBI	GATC	3 cut(s)	148, 310, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 276, 842
BstSCI	CCNGG	1 cut(s)	965
BstSLI	GKGCMC	1 cut(s)	972
BstUI	CGCG	2 cut(s)	113, 647
BstV1I	GCAGC	5 cut(s)	43, 46, 52, 238, 574
BstV2I	GAAGAC	3 cut(s)	134, 562, 743
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	636, 981
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	2 cut(s)	94, 776
BtrI	CACGTC	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	720, 751
BtsIMutI	CAGTG	1 cut(s)	1073
Cac8I	GCNNGC	2 cut(s)	240, 281
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	2 cut(s)	115, 847
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	634, 980
CseI	GACGC	5 cut(s)	367, 659, 675, 825, 937
CviAII	CATG	2 cut(s)	88, 941
DdeI	CTNAG	3 cut(s)	347, 505, 741
DpnI	GATC	3 cut(s)	150, 312, 600
DpnII	GATC	3 cut(s)	148, 310, 598
Eam1104I	CTCTTC	2 cut(s)	507, 1038
EarI	CTCTTC	2 cut(s)	507, 1038
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	60, 506
Eco81I	CCTNAGG	1 cut(s)	347
Eco88I	CYCGRG	2 cut(s)	265, 602
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	2 cut(s)	91, 944
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	2 cut(s)	87, 940
FauI	CCCGC	1 cut(s)	861
FblI	GTMKAC	3 cut(s)	689, 821, 839
Fnu4HI	GCNGC	6 cut(s)	32, 35, 66, 227, 230, 563
FokI	GGATG	2 cut(s)	727, 758
Fsp4HI	GCNGC	6 cut(s)	32, 35, 66, 227, 230, 563
GlaI	GCGC	2 cut(s)	114, 846
GluI	GCNGC	6 cut(s)	32, 35, 66, 227, 230, 563
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	636, 981
HapII	CCGG	7 cut(s)	239, 314, 403, 637, 782, 830, 966
HgaI	GACGC	5 cut(s)	367, 659, 675, 825, 937
HhaI	GCGC	2 cut(s)	115, 847
Hin1I	GRCGYC	3 cut(s)	692, 824, 836
Hin1II	CATG	2 cut(s)	91, 944
Hin6I	GCGC	2 cut(s)	113, 845
HinP1I	GCGC	2 cut(s)	113, 845
HincII	GTYRAC	4 cut(s)	690, 754, 822, 840
HindII	GTYRAC	4 cut(s)	690, 754, 822, 840
HinfI	GANTC	7 cut(s)	55, 297, 588, 642, 859, 883, 1048
HpaII	CCGG	7 cut(s)	239, 314, 403, 637, 782, 830, 966
HphI	GGTGA	3 cut(s)	391, 691, 781
Hpy166II	GTNNAC	6 cut(s)	690, 699, 754, 822, 840, 1052
Hpy188I	TCNGA	8 cut(s)	54, 79, 138, 442, 816, 864, 882, 888
Hpy188III	TCNNGA	5 cut(s)	265, 301, 314, 346, 602
Hpy8I	GTNNAC	6 cut(s)	690, 699, 754, 822, 840, 1052
HpyAV	CCTTC	3 cut(s)	298, 625, 1076
HpyCH4III	ACNGT	2 cut(s)	409, 1077
HpyCH4IV	ACGT	6 cut(s)	105, 375, 616, 692, 701, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 276, 842
HpyF3I	CTNAG	3 cut(s)	347, 505, 741
HpySE526I	ACGT	6 cut(s)	105, 375, 616, 692, 701, 824
Hsp92I	GRCGYC	3 cut(s)	692, 824, 836
Hsp92II	CATG	2 cut(s)	91, 944
HspAI	GCGC	2 cut(s)	113, 845
Kpn2I	TCCGGA	1 cut(s)	313
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	148, 310, 598
LmnI	GCTCC	4 cut(s)	445, 493, 501, 1036
Lsp1109I	GCAGC	5 cut(s)	43, 46, 52, 238, 574
LweI	GCATC	1 cut(s)	612
MaeII	ACGT	6 cut(s)	105, 375, 616, 692, 701, 824
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	150, 312, 600
MboI	GATC	3 cut(s)	148, 310, 598
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	414, 972
MluCI	AATT	2 cut(s)	910, 961
MlyI	GAGTC	4 cut(s)	597, 636, 868, 1057
MmeI	TCCRAC	2 cut(s)	420, 860
MroI	TCCGGA	1 cut(s)	313
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	7 cut(s)	239, 314, 403, 637, 782, 830, 966
MspR9I	CCNGG	1 cut(s)	967
MvnI	CGCG	2 cut(s)	113, 647
MwoI	GCNNNNNNNGC	3 cut(s)	235, 276, 842
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	967
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	148, 310, 598
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	91, 944
NlaIV	GGNNCC	2 cut(s)	344, 600
NmeAIII	GCCGAG	1 cut(s)	619
NmuCI	GTSAC	1 cut(s)	466
PaeR7I	CTCGAG	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	6 cut(s)	117, 425, 476, 698, 833, 923
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	55, 297, 883
PflFI	GACNNNGTC	2 cut(s)	694, 931
PkrI	GCNGC	6 cut(s)	33, 36, 67, 228, 231, 564
PleI	GAGTC	4 cut(s)	596, 636, 867, 1056
PpsI	GAGTC	4 cut(s)	596, 636, 867, 1056
Ppu21I	YACGTR	1 cut(s)	617
PsiI	TTATAA	1 cut(s)	894
PspN4I	GGNNCC	2 cut(s)	344, 600
PspPI	GGNCC	2 cut(s)	634, 980
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	598
PsyI	GACNNNGTC	2 cut(s)	694, 931
RseI	CAYNNNNRTG	1 cut(s)	945
SalI	GTCGAC	3 cut(s)	688, 820, 838
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	6 cut(s)	32, 35, 66, 227, 230, 563
Sau3AI	GATC	3 cut(s)	148, 310, 598
Sau96I	GGNCC	2 cut(s)	634, 980
SchI	GAGTC	4 cut(s)	597, 636, 868, 1057
ScrFI	CCNGG	1 cut(s)	967
SduI	GDGCHC	2 cut(s)	414, 972
SfaNI	GCATC	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	265
SgrDI	CGTCGACG	2 cut(s)	688, 838
SlaI	CTCGAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	910, 961
SsiI	CCGC	8 cut(s)	40, 229, 277, 560, 647, 868, 1034, 1058
StyD4I	CCNGG	1 cut(s)	965
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	409, 1077
TaiI	ACGT	6 cut(s)	108, 378, 619, 695, 704, 827
TaqI	TCGA	5 cut(s)	207, 266, 689, 821, 839
TasI	AATT	2 cut(s)	910, 961
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	3 cut(s)	55, 297, 883
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	1080
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	5 cut(s)	31, 34, 65, 226, 562
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	17, 140, 187, 762
TspGWI	ACGGA	5 cut(s)	36, 173, 485, 563, 721
TspRI	CASTG	1 cut(s)	1080
Tth111I	GACNNNGTC	2 cut(s)	694, 931
XhoI	CTCGAG	1 cut(s)	265
XmiI	GTMKAC	3 cut(s)	689, 821, 839
ZraI	GACGTC	2 cut(s)	693, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.