Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Forward (+)

238695 .. 239211

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000677.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgatggcatttcttcatagagtcgctgaggatcgtgagattttgccacgtatgatgctggagaaggaccggagactcgcggagggtttggggggacaagaagagccggctggtgatagcgtccacgggtggtggagccagaagcgggttgtgggtcggaatctgagtgataaggagttgtatggtaattctacggggttagcgacgcagtcgggtcatggaaatggaaatattagtaattacgggtacaggtttggcccgtttaggtatagtggaaataggagtggtagtggagaagtgggttattttgcggagctggaagagagttcaccaccgccttatccattctcactgttgcatgaagaatttgctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

125

Amino Acids

13.9

Weight (kDa)

5.54

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	80, 145, 311, 335
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	67, 257
AsuHPI	GGTGA	2 cut(s)	125, 321
AvaII	GGWCC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 257
BmiI	GGNNCC	1 cut(s)	137
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	18, 155
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	70, 107
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	80, 145, 311, 335
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	19, 156
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	2 cut(s)	96, 315
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	27, 164
BstDSI	CCRYGG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	67, 257
CseI	GACGC	2 cut(s)	109, 214
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	218, 359
CviJI	RGCY	5 cut(s)	106, 110, 138, 258, 316
CviKI_1	RGCY	5 cut(s)	106, 110, 138, 258, 316
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	27, 164
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	96, 315
EarI	CTCTTC	2 cut(s)	96, 315
Eco47I	GGWCC	1 cut(s)	67
FaeI	CATG	2 cut(s)	221, 362
FaiI	YATR	6 cut(s)	18, 53, 183, 219, 270, 360
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	217, 358
FauI	CCCGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	70, 107
HgaI	GACGC	2 cut(s)	109, 214
Hin1II	CATG	2 cut(s)	221, 362
HinfI	GANTC	3 cut(s)	21, 75, 160
HpaII	CCGG	2 cut(s)	70, 107
HphI	GGTGA	2 cut(s)	125, 321
Hpy166II	GTNNAC	2 cut(s)	124, 329
Hpy188I	TCNGA	2 cut(s)	159, 165
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	124, 329
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	27, 164
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	221, 362
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	135, 313
LpnPI	CCDG	8 cut(s)	44, 83, 96, 120, 152, 235, 302, 357
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	49
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	5, 113, 332, 374
MluCI	AATT	3 cut(s)	187, 238, 365
MlyI	GAGTC	2 cut(s)	30, 69
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	22, 76
MroNI	GCCGGC	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	2 cut(s)	70, 107
MvnI	CGCG	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	108
NdeII	GATC	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	221, 362
NlaIV	GGNNCC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PdiI	GCCGGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	160
PflFI	GACNNNGTC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	29, 69
PpsI	GAGTC	2 cut(s)	29, 69
Ppu21I	YACGTR	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	67, 257
PsyI	GACNNNGTC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	67, 257
SchI	GAGTC	2 cut(s)	30, 69
SetI	ASST	4 cut(s)	52, 254, 269, 318
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	187, 238, 365
SsiI	CCGC	4 cut(s)	80, 145, 311, 335
SspI	AATATT	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	52
TasI	AATT	3 cut(s)	187, 238, 365
TfiI	GAWTC	1 cut(s)	160
TscAI	CASTG	1 cut(s)	357
TspDTI	ATGAA	2 cut(s)	5, 375
TspRI	CASTG	1 cut(s)	357
Tth111I	GACNNNGTC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.