Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005364

Physical Location & Seq

Genomic Coordinates Reverse (-)

3891360 .. 3892529

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGATGATAACGAACACATCACACGGAGGAGAGCAGCAGCACCGCCGGTTGGTCCAGAATCCGAGGGCTTCAGAAAAGCCCATGGAGGACAACGGCAACGTCGTCGCGCCGTTCGTTATGAAGACTTATCAGATGGTCAGCGATCCTACAACGGACAGGTTAATCGCTTGGGGGAGGGCTAACAACAGCTTCATCGTCGTCGAGCCTTTGGAGTTCTCGCAGCGGCTGTTGCCGGCTTATTTCAAGCATAATAACTTCTCGAGCTTCGTCCGGCAGCTCAATACTTATGGATTCAGGAAGGTTGATCCGGACAGGTGGGAGTTTGCGAACGAGTGGTTCCTGCGGGGGCAGACGCATTTGTTGAAGAACGTGGTGAGGAGAAAACATAATAACAACAGGGCGGTGCTGAACACGACGACGGCGTATGGGAAGTCGGAGGAGCTTGACGACGAAGAAATAGCGACGGAGATAGCGAGGCTGAGGCAGGAGCAGAGGAGCTTAGAGGAAGAGGTGGAGAATATGAGCAAGAGATTGGAGGCGACGGAGAGAAGACCGCAGCAGATGATGGCGTTTCTTCACAGAGTCGCTGAGGATCCCGAGATTTTGCCACGTATGATGCTGGAGAAGGACCGGAGACTCGCGGAGGGGTTGGGGGCCAAGAAGCGTCGGCTGGTGATAGCGTCCACGTCTTCCACGTCATCATCGGGGATGGGGGCGACGGCTTCCGTGAAGACTGAGGATGAAGTTGACGGGGCGATGGGCGTGATTTCGTCGCCGGAGACGGGTTTTGAGATGGAGAGCTTTTCTCGGGGGTCGACGTCGCCGGAGGCGTCCACGCCGCAGGGGTGGTGGAGCCAGAAGCGGGTTGTGGGTCGGAATCGGAGTGATAAGGAGTTGTATGGTAATTCTACGGGGTTAGCGACGCAGTCGGGTCATGGAAATGGGAATAGTAGTCATTCCGGGTACGGGTTTGGCCCGTTTGGATATAGTGGAAATAGGAGTGCCAGTGGGGAAGTGGGTTATTTTGCGGAGCTGGAAGAGAGTCCACCTCCGCCTTATCCATTCTCACTGTTAGAAGGTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

362

Amino Acids

40.61

Weight (kDa)

6.3

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	38 - 127	2.2e-28	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24520
fragaria_vesca	FvH4_1g04810 FvH4_4g06391
malus_domestica	MD02G1046900.v1.1 MD15G1185400.v1.1
prunus_persica	Prupe.7G231100_v2.0.a1
pyrus_communis	pycom02g03920 pycom15g16650
rosa_chinensis	RchiOBHm_Chr2g0090441
rosa_laevigata	RLG00000016110 RLG00000029690
rosa_multiflora	Rmu_sc0000677.1_g000046 Rmu_sc0004514.1_g000019 Rmu_sc0021402.1_g000006 Rmu_sc0021719.1_g000003 Rmu_sc0033309.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151130
rosa_rugosa	Rorug01G0019000 Rorug02G0008100
rosa_samantha	Rh1DG089800 Rh2AG053500 Rh2BG052900 Rh2CG054900 Rh2CG194800 Rh2CG484800 Rh2DG053700 Rh2DG065200 Rh7DG251900
rosa_wichuraiana	Rw2G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	815
AccII	CGCG	2 cut(s)	107, 641
AccIII	TCCGGA	1 cut(s)	307
AclWI	GGATC	4 cut(s)	137, 299, 587, 600
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	2 cut(s)	818, 830
AfaI	GTAC	1 cut(s)	965
AfiI	CCNNNNNNNGG	4 cut(s)	49, 782, 862, 966
AgsI	TTSAA	2 cut(s)	244, 364
AjiI	CACGTC	2 cut(s)	687, 696
AluBI	AGCT	7 cut(s)	189, 264, 277, 442, 498, 801, 1033
AluI	AGCT	7 cut(s)	189, 264, 277, 442, 498, 801, 1033
Alw26I	GTCTC	2 cut(s)	628, 773
AlwI	GGATC	4 cut(s)	137, 299, 587, 600
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	3 cut(s)	259, 596, 807
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	654, 973
ApeKI	GCWGC	5 cut(s)	34, 37, 220, 274, 556
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	4 cut(s)	52, 628, 654, 974
AsuC2I	CCSGG	1 cut(s)	961
AsuHPI	GGTGA	2 cut(s)	385, 685
AvaI	CYCGRG	3 cut(s)	259, 596, 807
AvaII	GGWCC	2 cut(s)	52, 628
BamHI	GGATCC	1 cut(s)	592
BbsI	GAAGAC	4 cut(s)	128, 556, 681, 737
BbvCI	CCTCAGC	2 cut(s)	479, 588
BbvI	GCAGC	5 cut(s)	46, 49, 232, 286, 568
BccI	CCATC	5 cut(s)	127, 559, 703, 751, 787
BceAI	ACGGC	4 cut(s)	94, 109, 435, 735
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BcnI	CCSGG	1 cut(s)	961
BcoDI	GTCTC	2 cut(s)	628, 773
BisI	GCNGC	7 cut(s)	35, 38, 221, 224, 275, 557, 839
BlsI	GCNGC	7 cut(s)	36, 39, 222, 225, 276, 558, 840
Bme1390I	CCNGG	1 cut(s)	961
Bme18I	GGWCC	2 cut(s)	52, 628
BmeT110I	CYCGRG	3 cut(s)	259, 596, 807
BmgBI	CACGTC	2 cut(s)	687, 696
BmgT120I	GGNCC	4 cut(s)	52, 628, 654, 974
BmiI	GGNNCC	4 cut(s)	338, 594, 655, 854
BmrFI	CCNGG	1 cut(s)	961
BmsI	GCATC	1 cut(s)	606
BpiI	GAAGAC	4 cut(s)	128, 556, 681, 737
BplI	GAGNNNNNCTC	4 cut(s)	790, 822, 1033, 1065
BpmI	CTGGAG	1 cut(s)	641
Bpu10I	CCTNAGC	2 cut(s)	479, 588
BpuMI	CCSGG	1 cut(s)	961
BsaAI	YACGTR	1 cut(s)	611
BsaHI	GRCGYC	2 cut(s)	818, 830
BsaJI	CCNNGG	2 cut(s)	62, 81
BsaWI	WCCGGW	2 cut(s)	307, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	991, 1021
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 782, 862, 966
Bse118I	RCCGGY	2 cut(s)	45, 232
Bse1I	ACTGG	1 cut(s)	1005
BseAI	TCCGGA	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	62, 81
BseGI	GGATG	2 cut(s)	714, 745
BseLI	CCNNNNNNNGG	4 cut(s)	49, 782, 862, 966
BseMII	CTCAG	3 cut(s)	470, 579, 726
BseNI	ACTGG	1 cut(s)	1005
BseRI	GAGGAG	4 cut(s)	42, 391, 452, 508
BseXI	GCAGC	5 cut(s)	46, 49, 232, 286, 568
Bsh1236I	CGCG	2 cut(s)	107, 641
BshFI	GGCC	2 cut(s)	656, 975
BsiHKCI	CYCGRG	3 cut(s)	259, 596, 807
BsiSI	CCGG	8 cut(s)	46, 233, 271, 308, 631, 776, 824, 960
BslI	CCNNNNNNNGG	4 cut(s)	49, 782, 862, 966
BsmAI	GTCTC	2 cut(s)	628, 773
BsmBI	CGTCTC	1 cut(s)	773
BsnI	GGCC	2 cut(s)	656, 975
BsoBI	CYCGRG	3 cut(s)	259, 596, 807
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	142, 304, 592
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	2 cut(s)	656, 975
BspCNI	CTCAG	3 cut(s)	471, 580, 727
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	107, 641
BspLI	GGNNCC	4 cut(s)	338, 594, 655, 854
BspPI	GGATC	4 cut(s)	137, 299, 587, 600
BsrFI	RCCGGY	2 cut(s)	45, 232
BsrI	ACTGG	1 cut(s)	1005
BssAI	RCCGGY	2 cut(s)	45, 232
BssECI	CCNNGG	2 cut(s)	62, 81
BssMI	GATC	3 cut(s)	142, 304, 592
BssNI	GRCGYC	2 cut(s)	818, 830
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	1071
Bst6I	CTCTTC	2 cut(s)	501, 1032
BstACI	GRCGYC	2 cut(s)	818, 830
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	479, 499, 588, 735
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	714, 745
BstFNI	CGCG	2 cut(s)	107, 641
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	3 cut(s)	145, 307, 595
BstMAI	GTCTC	2 cut(s)	628, 773
BstMBI	GATC	3 cut(s)	142, 304, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	959
BstUI	CGCG	2 cut(s)	107, 641
BstV1I	GCAGC	5 cut(s)	46, 49, 232, 286, 568
BstV2I	GAAGAC	4 cut(s)	128, 556, 681, 737
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	656, 975
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	770
BtrI	CACGTC	2 cut(s)	687, 696
BtsCI	GGATG	2 cut(s)	714, 745
BtsIMutI	CAGTG	2 cut(s)	1012, 1067
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	2 cut(s)	45, 232
Cfr13I	GGNCC	4 cut(s)	52, 628, 654, 974
CseI	GACGC	5 cut(s)	361, 653, 669, 819, 931
Csp6I	GTAC	1 cut(s)	964
CviAII	CATG	2 cut(s)	82, 935
CviQI	GTAC	1 cut(s)	964
DdeI	CTNAG	4 cut(s)	479, 499, 588, 735
DpnI	GATC	3 cut(s)	144, 306, 594
DpnII	GATC	3 cut(s)	142, 304, 592
Eam1104I	CTCTTC	2 cut(s)	501, 1032
EarI	CTCTTC	2 cut(s)	501, 1032
EciI	GGCGGA	1 cut(s)	1041
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	52, 628
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	3 cut(s)	259, 596, 807
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	773
FaeI	CATG	2 cut(s)	85, 938
FatI	CATG	2 cut(s)	81, 934
FauI	CCCGC	2 cut(s)	336, 855
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	7 cut(s)	35, 38, 221, 224, 275, 557, 839
FokI	GGATG	2 cut(s)	721, 752
Fsp4HI	GCNGC	7 cut(s)	35, 38, 221, 224, 275, 557, 839
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	7 cut(s)	35, 38, 221, 224, 275, 557, 839
GsuI	CTGGAG	1 cut(s)	641
HaeIII	GGCC	2 cut(s)	656, 975
HapII	CCGG	8 cut(s)	46, 233, 271, 308, 631, 776, 824, 960
HgaI	GACGC	5 cut(s)	361, 653, 669, 819, 931
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	2 cut(s)	818, 830
Hin1II	CATG	2 cut(s)	85, 938
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	748, 816
HindII	GTYRAC	2 cut(s)	748, 816
HinfI	GANTC	6 cut(s)	58, 291, 582, 636, 877, 1042
HpaII	CCGG	8 cut(s)	46, 233, 271, 308, 631, 776, 824, 960
HphI	GGTGA	2 cut(s)	385, 685
Hpy166II	GTNNAC	5 cut(s)	684, 748, 816, 834, 1046
Hpy188I	TCNGA	6 cut(s)	63, 73, 132, 436, 876, 882
Hpy188III	TCNNGA	5 cut(s)	55, 259, 295, 308, 596
Hpy8I	GTNNAC	5 cut(s)	684, 748, 816, 834, 1046
HpyAV	CCTTC	3 cut(s)	292, 619, 1070
HpyCH4III	ACNGT	1 cut(s)	1071
HpyCH4IV	ACGT	6 cut(s)	99, 369, 610, 686, 695, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	4 cut(s)	479, 499, 588, 735
HpySE526I	ACGT	6 cut(s)	99, 369, 610, 686, 695, 818
Hsp92I	GRCGYC	2 cut(s)	818, 830
Hsp92II	CATG	2 cut(s)	85, 938
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	142, 304, 592
LmnI	GCTCC	5 cut(s)	439, 487, 495, 852, 1030
Lsp1109I	GCAGC	5 cut(s)	46, 49, 232, 286, 568
LweI	GCATC	1 cut(s)	606
MaeII	ACGT	6 cut(s)	99, 369, 610, 686, 695, 818
MalI	GATC	3 cut(s)	144, 306, 594
MboI	GATC	3 cut(s)	142, 304, 592
MboII	GAAGA	9 cut(s)	133, 376, 464, 518, 561, 566, 681, 742, 1049
MflI	RGATCY	1 cut(s)	592
MluCI	AATT	1 cut(s)	904
MlyI	GAGTC	3 cut(s)	591, 630, 1051
MmeI	TCCRAC	2 cut(s)	414, 854
MroI	TCCGGA	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	8 cut(s)	46, 233, 271, 308, 631, 776, 824, 960
MspR9I	CCNGG	1 cut(s)	961
MvnI	CGCG	2 cut(s)	107, 641
MwoI	GCNNNNNNNGC	1 cut(s)	229
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	961
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	3 cut(s)	142, 304, 592
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	85, 938
NlaIV	GGNNCC	4 cut(s)	338, 594, 655, 854
PaeR7I	CTCGAG	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	7 cut(s)	99, 111, 419, 470, 692, 827, 917
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	58, 291, 877
PflFI	GACNNNGTC	1 cut(s)	925
PkrI	GCNGC	7 cut(s)	36, 39, 222, 225, 276, 558, 840
PleI	GAGTC	3 cut(s)	590, 630, 1050
PpsI	GAGTC	3 cut(s)	590, 630, 1050
Ppu21I	YACGTR	1 cut(s)	611
PspN4I	GGNNCC	4 cut(s)	338, 594, 655, 854
PspPI	GGNCC	4 cut(s)	52, 628, 654, 974
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	592
PsyI	GACNNNGTC	1 cut(s)	925
RsaI	GTAC	1 cut(s)	965
RsaNI	GTAC	1 cut(s)	964
RseI	CAYNNNNRTG	1 cut(s)	939
SalI	GTCGAC	1 cut(s)	814
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	7 cut(s)	35, 38, 221, 224, 275, 557, 839
Sau3AI	GATC	3 cut(s)	142, 304, 592
Sau96I	GGNCC	4 cut(s)	52, 628, 654, 974
SchI	GAGTC	3 cut(s)	591, 630, 1051
ScrFI	CCNGG	1 cut(s)	961
SfaNI	GCATC	1 cut(s)	606
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	52, 628
SlaI	CTCGAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	939
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	904
StyD4I	CCNGG	1 cut(s)	959
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	1071
TaiI	ACGT	6 cut(s)	102, 372, 613, 689, 698, 821
TaqI	TCGA	3 cut(s)	201, 260, 815
TasI	AATT	1 cut(s)	904
TauI	GCSGC	2 cut(s)	226, 841
TfiI	GAWTC	3 cut(s)	58, 291, 877
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	1012, 1074
TseI	GCWGC	5 cut(s)	34, 37, 220, 274, 556
TspDTI	ATGAA	3 cut(s)	134, 181, 756
TspGWI	ACGGA	5 cut(s)	39, 167, 479, 557, 715
TspRI	CASTG	2 cut(s)	1012, 1074
Tth111I	GACNNNGTC	1 cut(s)	925
VpaK11BI	GGWCC	2 cut(s)	52, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XhoI	CTCGAG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	815
ZraI	GACGTC	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.