AT3G47830
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003200
Physical Location & Seq
Forward (+)
17647004 .. 17648431
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47830.1

Sequence Viewer

Length: 882 bp
ATGAGTAAAGCCCAAAAACGGAAACGCCTAAACAAATACGACGGCGAATCAAAAACTCCGGCCAATAAATCAACCGTCGACGGCGGCAATCCTTACCCTACACTACTTAGACCTACCGCTGAAGAATGCCGAGACGTAAGGGATGCTTTGTTGTCTCTCCATGGATTCCCTCCCGAATTCGCTAATTACCGCCGTCAAAGACTCCGATCATTCTCCGCCGTCGATGATCACGATACACAGTGTAATCTGAAATCTGAGACATTGAATGAAACGGAAGAGGAGAGTGTACTTGATGGGCTTGTTAAGATTCTTCTCTCGCAGAATACAACTGAGAGCAATTCCCAAAGGGCTTTTGCTTCTCTTAAAGCTACATTTCCGAAATGGGATGACGTTTTGAATGCTGAGTCTAAATCAATTGAGAATGCTATAAGATGTGGAGGATTGGCACCGAAAAAGGCGGTGTGTATCAAGAACATATTGAACCGTTTGCAGAACGAAAGAGGTAGATTGTGCTTGGAGTATCTGCGAGGTTTATCGGTCGAAGAAGTAAAAACCGAGCTCTCTCATTTTAAAGGAGTAGGACCTAAAACGGTTTCTTGTGTTCTGATGTTCAATCTCCAGCACAATGATTTCCCAGTAGACACTCATGTGTTTGAGATCGCAAAGGCGTTAGGTTGGGTTCCGAAAACCGCAGACAGGAACAAAACGTATGTTCATCTCAACCGCAAGATCCCTGATGAGCTCAAGTTTGATCTGAACTGTCTGTTATATACACATGGTAAGATCTGCAGCAATTGCAAGAAGAATGTTGCTAAACCAAAAGCTAAAGTGGCATCTCCTGATGATTGCCCTCTTGTTGGTTTTTATGATTTAATAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

293

Amino Acids

32.97

Weight (kDa)

8.9

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 101 - 244 6.8e-11 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccI GTMKAC 2 cut(s) 78, 639
AciI CCGC 7 cut(s) 84, 117, 190, 216, 458, 690, 724
AclWI GGATC 1 cut(s) 724
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 3 cut(s) 18, 696, 857
AgsI TTSAA 4 cut(s) 265, 397, 481, 613
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 4 cut(s) 368, 559, 742, 824
AluI AGCT 4 cut(s) 368, 559, 742, 824
Alw21I GWGCWC 2 cut(s) 561, 744
Alw26I GTCTC 3 cut(s) 126, 159, 251
AlwI GGATC 1 cut(s) 724
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 789
ApoI RAATTY 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 581
AvaII GGWCC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 2 cut(s) 561, 744
Bbv12I GWGCWC 2 cut(s) 561, 744
BbvI GCAGC 1 cut(s) 801
BccI CCATC 1 cut(s) 287
BceAI ACGGC 4 cut(s) 58, 97, 177, 203
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 126, 159, 251
BfmI CTRYAG 1 cut(s) 787
BglII AGATCT 1 cut(s) 783
BisI GCNGC 2 cut(s) 85, 790
BlsI GCNGC 2 cut(s) 86, 791
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 2 cut(s) 447, 681
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 2 cut(s) 133, 842
BmuI ACTGGG 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 728
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 696, 857
Bse1I ACTGG 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 148, 391
BseLI CCNNNNNNNGG 3 cut(s) 18, 696, 857
BseMII CTCAG 3 cut(s) 246, 321, 393
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 801
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 561, 744
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 18, 696, 857
BsmAI GTCTC 3 cut(s) 126, 159, 251
BsmBI CGTCTC 1 cut(s) 126
BsmI GAATGC 3 cut(s) 131, 403, 427
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 561, 744
Bsp143I GATC 6 cut(s) 206, 226, 657, 729, 751, 783
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 7 cut(s) 84, 117, 190, 216, 458, 690, 724
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 3 cut(s) 247, 322, 394
BspLI GGNNCC 2 cut(s) 447, 681
BspMAI CTGCAG 1 cut(s) 791
BspPI GGATC 1 cut(s) 724
BspT107I GGYRCC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 6 cut(s) 206, 226, 657, 729, 751, 783
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 5 cut(s) 76, 240, 485, 592, 761
Bst6I CTCTTC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 795
BstDEI CTNAG 4 cut(s) 107, 255, 330, 402
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 148, 391
BstKTI GATC 6 cut(s) 209, 229, 660, 732, 754, 786
BstMAI GTCTC 3 cut(s) 126, 159, 251
BstMBI GATC 6 cut(s) 206, 226, 657, 729, 751, 783
BstMCI CGRYCG 1 cut(s) 540
BstMWI GCNNNNNNNGC 2 cut(s) 795, 830
BstSFI CTRYAG 1 cut(s) 787
BstV1I GCAGC 1 cut(s) 801
BstX2I RGATCY 2 cut(s) 729, 783
BstYI RGATCY 2 cut(s) 729, 783
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 148, 391
BtsIMutI CAGTG 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 287
CviAII CATG 3 cut(s) 161, 647, 776
CviJI RGCY 8 cut(s) 11, 62, 298, 350, 368, 559, 742, 824
CviKI_1 RGCY 8 cut(s) 11, 62, 298, 350, 368, 559, 742, 824
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 4 cut(s) 107, 255, 330, 402
DpnI GATC 6 cut(s) 208, 228, 659, 731, 753, 785
DpnII GATC 6 cut(s) 206, 226, 657, 729, 751, 783
DraI TTTAAA 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 2 cut(s) 559, 742
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 2 cut(s) 561, 744
Eco47I GGWCC 1 cut(s) 581
Eco53kI GAGCTC 2 cut(s) 559, 742
Eco57I CTGAAG 1 cut(s) 141
EcoICRI GAGCTC 2 cut(s) 559, 742
EcoO109I RGGNCCY 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 2 cut(s) 561, 744
ErhI CCWWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 3 cut(s) 164, 650, 779
FaiI YATR 9 cut(s) 162, 428, 476, 648, 711, 769, 771, 777, 867
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 3 cut(s) 160, 646, 775
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 2 cut(s) 78, 639
Fnu4HI GCNGC 2 cut(s) 85, 790
FokI GGATG 2 cut(s) 155, 398
FriOI GRGCYC 2 cut(s) 561, 744
Fsp4HI GCNGC 2 cut(s) 85, 790
GluI GCNGC 2 cut(s) 85, 790
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 59
Hin1II CATG 3 cut(s) 164, 650, 779
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 5 cut(s) 47, 165, 201, 307, 404
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 3 cut(s) 79, 287, 640
Hpy188I TCNGA 7 cut(s) 206, 249, 256, 378, 606, 684, 756
Hpy188III TCNNGA 4 cut(s) 173, 230, 469, 839
Hpy8I GTNNAC 3 cut(s) 79, 287, 640
Hpy99I CGWCG 4 cut(s) 44, 80, 83, 224
HpyCH4III ACNGT 5 cut(s) 76, 240, 485, 592, 761
HpyCH4IV ACGT 3 cut(s) 135, 390, 707
HpyCH4V TGCA 3 cut(s) 490, 789, 798
HpyF10VI GCNNNNNNNGC 2 cut(s) 795, 830
HpyF3I CTNAG 4 cut(s) 107, 255, 330, 402
HpySE526I ACGT 3 cut(s) 135, 390, 707
Hsp92II CATG 3 cut(s) 164, 650, 779
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 6 cut(s) 206, 226, 657, 729, 751, 783
LpnPI CCDG 6 cut(s) 72, 632, 648, 682, 747, 852
Lsp1109I GCAGC 1 cut(s) 801
LweI GCATC 2 cut(s) 133, 842
MaeII ACGT 3 cut(s) 135, 390, 707
MalI GATC 6 cut(s) 208, 228, 659, 731, 753, 785
MboI GATC 6 cut(s) 206, 226, 657, 729, 751, 783
MboII GAAGA 5 cut(s) 134, 287, 302, 554, 814
MfeI CAATTG 2 cut(s) 414, 793
MflI RGATCY 2 cut(s) 729, 783
MhlI GDGCHC 2 cut(s) 561, 744
MluCI AATT 5 cut(s) 176, 184, 337, 414, 793
MlyI GAGTC 2 cut(s) 195, 413
MnlI CCTC 6 cut(s) 180, 271, 431, 494, 521, 861
MseI TTAA 4 cut(s) 303, 363, 570, 872
MslI CAYNNNNRTG 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 59
MunI CAATTG 2 cut(s) 414, 793
Mva1269I GAATGC 3 cut(s) 131, 403, 427
MwoI GCNNNNNNNGC 2 cut(s) 795, 830
NcoI CCATGG 1 cut(s) 160
NdeII GATC 6 cut(s) 206, 226, 657, 729, 751, 783
NlaIII CATG 3 cut(s) 164, 650, 779
NlaIV GGNNCC 2 cut(s) 447, 681
NmeAIII GCCGAG 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 3 cut(s) 131, 403, 427
PfeI GAWTC 3 cut(s) 47, 165, 307
PkrI GCNGC 2 cut(s) 86, 791
PleI GAGTC 2 cut(s) 195, 412
PpsI GAGTC 2 cut(s) 195, 412
PpuMI RGGWCCY 1 cut(s) 581
Psp124BI GAGCTC 2 cut(s) 561, 744
Psp5II RGGWCCY 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 447, 681
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PstI CTGCAG 1 cut(s) 791
PsuI RGATCY 2 cut(s) 729, 783
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 647
SacI GAGCTC 2 cut(s) 561, 744
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 4 cut(s) 303, 363, 570, 872
SatI GCNGC 2 cut(s) 85, 790
Sau3AI GATC 6 cut(s) 206, 226, 657, 729, 751, 783
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 2 cut(s) 195, 413
SduI GDGCHC 2 cut(s) 561, 744
SfaNI GCATC 2 cut(s) 133, 842
SfcI CTRYAG 1 cut(s) 787
SgrDI CGTCGACG 1 cut(s) 77
SinI GGWCC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
Sse9I AATT 5 cut(s) 176, 184, 337, 414, 793
SsiI CCGC 7 cut(s) 84, 117, 190, 216, 458, 690, 724
SstI GAGCTC 2 cut(s) 561, 744
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 5 cut(s) 76, 240, 485, 592, 761
TaiI ACGT 3 cut(s) 138, 393, 710
TaqI TCGA 3 cut(s) 78, 222, 540
TaqII GACCGA 1 cut(s) 526
TasI AATT 5 cut(s) 176, 184, 337, 414, 793
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 3 cut(s) 47, 165, 307
Tru1I TTAA 4 cut(s) 303, 363, 570, 872
Tru9I TTAA 4 cut(s) 303, 363, 570, 872
TscAI CASTG 1 cut(s) 245
TseI GCWGC 1 cut(s) 789
TspDTI ATGAA 2 cut(s) 282, 704
TspGWI ACGGA 2 cut(s) 34, 287
TspRI CASTG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 78, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.