HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47830 |
| fragaria_vesca | FvH4_5g16440 FvH4_5g16440 FvH4_5g16440 |
| malus_domestica | MD06G1180800.v1.1 |
| prunus_persica | Prupe.5G178800_v2.0.a1 |
| pyrus_communis | pycom06g15990 |
| rosa_chinensis | RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661 |
| rosa_laevigata | RLG00000005332 RLG00000018712 |
| rosa_multiflora | Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00121220 |
| rosa_rugosa | Rorug06G0427000 Rorug06G0427000 Rorug06G0427100 |
| rosa_samantha | Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400 |
| rosa_wichuraiana | Rw0G007640 Rw7G002140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 147 |
| AcuI | CTGAAG | 1 cut(s) | 218 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AleI | CACNNNNGTG | 1 cut(s) | 263 |
| AluBI | AGCT | 5 cut(s) | 30, 62, 74, 124, 175 |
| AluI | AGCT | 5 cut(s) | 30, 62, 74, 124, 175 |
| Alw21I | GWGCWC | 1 cut(s) | 177 |
| ApeKI | GCWGC | 1 cut(s) | 14 |
| AspS9I | GGNCC | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 197 |
| BanII | GRGCYC | 1 cut(s) | 177 |
| Bbv12I | GWGCWC | 1 cut(s) | 177 |
| BfuAI | ACCTGC | 1 cut(s) | 147 |
| BisI | GCNGC | 1 cut(s) | 15 |
| BlpI | GCTNAGC | 1 cut(s) | 171 |
| BlsI | GCNGC | 1 cut(s) | 16 |
| Bme18I | GGWCC | 1 cut(s) | 197 |
| BmgT120I | GGNCC | 1 cut(s) | 197 |
| BmiI | GGNNCC | 1 cut(s) | 297 |
| BpmI | CTGGAG | 1 cut(s) | 128 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 171 |
| Bse1I | ACTGG | 1 cut(s) | 299 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseMII | CTCAG | 2 cut(s) | 86, 162 |
| BseNI | ACTGG | 1 cut(s) | 299 |
| BsiHKAI | GWGCWC | 1 cut(s) | 177 |
| Bsp1286I | GDGCHC | 1 cut(s) | 177 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 2 cut(s) | 87, 163 |
| BspLI | GGNNCC | 1 cut(s) | 297 |
| BspMI | ACCTGC | 1 cut(s) | 147 |
| BsrI | ACTGG | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstDEI | CTNAG | 4 cut(s) | 31, 63, 95, 171 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstNSI | RCATGY | 1 cut(s) | 94 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| BveI | ACCTGC | 1 cut(s) | 147 |
| Cfr13I | GGNCC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 189, 224 |
| CviAII | CATG | 2 cut(s) | 91, 263 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 4 cut(s) | 31, 63, 95, 171 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco24I | GRGCYC | 1 cut(s) | 177 |
| Eco47I | GGWCC | 1 cut(s) | 197 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 218 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoT38I | GRGCYC | 1 cut(s) | 177 |
| FaeI | CATG | 2 cut(s) | 94, 266 |
| FaiI | YATR | 5 cut(s) | 44, 92, 264, 287, 325 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FatI | CATG | 2 cut(s) | 90, 262 |
| Fnu4HI | GCNGC | 1 cut(s) | 15 |
| FokI | GGATG | 1 cut(s) | 318 |
| FriOI | GRGCYC | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 1 cut(s) | 15 |
| GluI | GCNGC | 1 cut(s) | 15 |
| GsuI | CTGGAG | 1 cut(s) | 128 |
| Hin1II | CATG | 2 cut(s) | 94, 266 |
| HindIII | AAGCTT | 3 cut(s) | 28, 72, 122 |
| HinfI | GANTC | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 1 cut(s) | 256 |
| Hpy8I | GTNNAC | 1 cut(s) | 256 |
| HpyAV | CCTTC | 1 cut(s) | 109 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4V | TGCA | 1 cut(s) | 278 |
| HpyF3I | CTNAG | 4 cut(s) | 31, 63, 95, 171 |
| Hsp92II | CATG | 2 cut(s) | 94, 266 |
| LmnI | GCTCC | 1 cut(s) | 305 |
| LpnPI | CCDG | 5 cut(s) | 92, 152, 264, 298, 312 |
| MboII | GAAGA | 2 cut(s) | 124, 320 |
| MhlI | GDGCHC | 1 cut(s) | 177 |
| MluCI | AATT | 1 cut(s) | 162 |
| MmeI | TCCRAC | 2 cut(s) | 253, 283 |
| MseI | TTAA | 3 cut(s) | 84, 221, 337 |
| MslI | CAYNNNNRTG | 1 cut(s) | 263 |
| NlaIII | CATG | 2 cut(s) | 94, 266 |
| NlaIV | GGNNCC | 1 cut(s) | 297 |
| NspI | RCATGY | 1 cut(s) | 94 |
| OliI | CACNNNNGTG | 1 cut(s) | 263 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PkrI | GCNGC | 1 cut(s) | 16 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 297 |
| PspPI | GGNCC | 1 cut(s) | 197 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 263 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 3 cut(s) | 84, 221, 337 |
| SatI | GCNGC | 1 cut(s) | 15 |
| Sau96I | GGNCC | 1 cut(s) | 197 |
| SduI | GDGCHC | 1 cut(s) | 177 |
| SetI | ASST | 8 cut(s) | 9, 32, 64, 76, 126, 141, 177, 199 |
| SinI | GGWCC | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 263 |
| Sse9I | AATT | 1 cut(s) | 162 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TasI | AATT | 1 cut(s) | 162 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 3 cut(s) | 84, 221, 337 |
| Tru9I | TTAA | 3 cut(s) | 84, 221, 337 |
| TseI | GCWGC | 1 cut(s) | 14 |
| TspDTI | ATGAA | 3 cut(s) | 17, 174, 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 197 |
| XceI | RCATGY | 1 cut(s) | 94 |