Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005329.1

Orthogroup ID

OG0003200

Physical Location & Seq

Genomic Coordinates Reverse (-)

152415 .. 153728

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005329.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgccgaaaagccgcaaaagaaagcagcaggtggaggttgaccaccacccaaaacctccaaccaaaacacccaaaaccaccaaagagacgccaaaggacccatacccgaatcacgcccgacccacccgagaagaatgcgtgtccgtccgagacgacctcttggccctccacggcttcccccaagagttcgccaagtaccgagaacagcgactgagttctcaaacatccaacggctgcgacgtagccgtcagttcagagccgtcggatgaaaaggagagtgtcttggatggtttagtgagaactctattgtctcagaataccacggaagctaattcccagaaagcctttgcttctctcaagtcagcttttccaacttgggaagaggtggcttgtgttttaatgttccaacttcagcaagatgattttcctgtggacacccatgtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctgtatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaaaaggaatccgaggatatcaattcctgtcctttggtacgttactgcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

8.06

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47830
fragaria_vesca	FvH4_5g16440 FvH4_5g16440 FvH4_5g16440
malus_domestica	MD06G1180800.v1.1
prunus_persica	Prupe.5G178800_v2.0.a1
pyrus_communis	pycom06g15990
rosa_chinensis	RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661
rosa_laevigata	RLG00000005332 RLG00000018712
rosa_multiflora	Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121220
rosa_rugosa	Rorug06G0427000 Rorug06G0427000 Rorug06G0427100
rosa_samantha	Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400
rosa_wichuraiana	Rw0G007640 Rw7G002140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	13, 583
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	2 cut(s)	197, 663
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	3 cut(s)	329, 365, 577
AluI	AGCT	3 cut(s)	329, 365, 577
Alw26I	GTCTC	3 cut(s)	80, 144, 315
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	25, 234, 619
ApoI	RAATTY	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	97, 163
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	37, 221, 631
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	4 cut(s)	187, 230, 244, 247
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciVI	GTATCC	1 cut(s)	516
BcoDI	GTCTC	3 cut(s)	80, 144, 315
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	516
BisI	GCNGC	5 cut(s)	13, 26, 235, 583, 620
BlsI	GCNGC	5 cut(s)	14, 27, 236, 584, 621
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	97, 163
BmiI	GGNNCC	2 cut(s)	99, 474
BmsI	GCATC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpuEI	CTTGAG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	169, 321, 636
Bse1I	ACTGG	2 cut(s)	476, 616
BseDI	CCNNGG	3 cut(s)	169, 321, 636
BseGI	GGATG	3 cut(s)	224, 271, 292
BseMII	CTCAG	2 cut(s)	203, 326
BseNI	ACTGG	2 cut(s)	476, 616
BseXI	GCAGC	3 cut(s)	37, 221, 631
BshFI	GGCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	126
BsmAI	GTCTC	3 cut(s)	80, 144, 315
BsmBI	CGTCTC	2 cut(s)	80, 144
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	544
BspACI	CCGC	2 cut(s)	13, 583
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	204, 325
BspLI	GGNNCC	2 cut(s)	99, 474
BspMI	ACCTGC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	476, 616
BssECI	CCNNGG	3 cut(s)	169, 321, 636
BssMI	GATC	1 cut(s)	544
BssNAI	GTATAC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	89
Bst1107I	GTATAC	1 cut(s)	564
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	212, 312
BstDSI	CCRYGG	2 cut(s)	169, 321
BstF5I	GGATG	3 cut(s)	224, 271, 292
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	3 cut(s)	80, 144, 315
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	37, 221, 631
BstZ17I	GTATAC	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	169, 321
BtsCI	GGATG	3 cut(s)	224, 271, 292
BtsIMutI	CAGTG	1 cut(s)	609
BveI	ACCTGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	97, 163
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	196, 662
CviAII	CATG	2 cut(s)	440, 569
CviQI	GTAC	2 cut(s)	196, 662
DdeI	CTNAG	2 cut(s)	212, 312
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	643
Esp3I	CGTCTC	2 cut(s)	80, 144
FaeI	CATG	2 cut(s)	443, 572
FaiI	YATR	6 cut(s)	103, 441, 464, 502, 564, 570
FatI	CATG	2 cut(s)	439, 568
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	5 cut(s)	13, 26, 235, 583, 620
FokI	GGATG	3 cut(s)	211, 278, 299
Fsp4HI	GCNGC	5 cut(s)	13, 26, 235, 583, 620
GluI	GCNGC	5 cut(s)	13, 26, 235, 583, 620
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	443, 572
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	109, 632
Hpy166II	GTNNAC	3 cut(s)	40, 433, 564
Hpy188I	TCNGA	6 cut(s)	149, 256, 265, 315, 549, 637
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	3 cut(s)	40, 433, 564
Hpy99I	CGWCG	2 cut(s)	242, 265
HpyAV	CCTTC	1 cut(s)	566
HpyCH4IV	ACGT	2 cut(s)	240, 664
HpyCH4V	TGCA	3 cut(s)	455, 591, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	2 cut(s)	212, 312
HpySE526I	ACGT	2 cut(s)	240, 664
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	443, 572
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	8 cut(s)	14, 350, 441, 475, 489, 540, 597, 664
Lsp1109I	GCAGC	3 cut(s)	37, 221, 631
LweI	GCATC	1 cut(s)	600
MaeII	ACGT	2 cut(s)	240, 664
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	3 cut(s)	143, 392, 497
MluCI	AATT	3 cut(s)	331, 539, 646
MmeI	TCCRAC	6 cut(s)	83, 243, 252, 395, 430, 460
MnlI	CCTC	7 cut(s)	28, 66, 167, 176, 376, 596, 631
MseI	TTAA	3 cut(s)	398, 513, 537
MslI	CAYNNNNRTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	588
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	2 cut(s)	443, 572
NlaIV	GGNNCC	2 cut(s)	99, 474
OliI	CACNNNNGTG	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	109, 632
PkrI	GCNGC	5 cut(s)	14, 27, 236, 584, 621
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	99, 474
PspPI	GGNCC	2 cut(s)	97, 163
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	197, 663
RsaNI	GTAC	2 cut(s)	196, 662
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	398, 513, 537
SatI	GCNGC	5 cut(s)	13, 26, 235, 583, 620
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	2 cut(s)	97, 163
SfaNI	GCATC	1 cut(s)	600
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	331, 539, 646
SsiI	CCGC	2 cut(s)	13, 583
TaiI	ACGT	2 cut(s)	243, 667
TasI	AATT	3 cut(s)	331, 539, 646
TauI	GCSGC	2 cut(s)	15, 585
TfiI	GAWTC	2 cut(s)	109, 632
Tru1I	TTAA	3 cut(s)	398, 513, 537
Tru9I	TTAA	3 cut(s)	398, 513, 537
TscAI	CASTG	1 cut(s)	616
TseI	GCWGC	3 cut(s)	25, 234, 619
TspDTI	ATGAA	3 cut(s)	282, 497, 546
TspGWI	ACGGA	2 cut(s)	133, 338
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.