Rw0G007640
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00274
OG0003200
Physical Location & Seq
Reverse (-)
18731 .. 19441
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007640.1

Sequence Viewer

Length: 504 bp
GTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGCATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTAGAATACCTGCAAGATTTGTCAGTTGATGAAATTAAGGCTGAGCTCTCTCATTTCAAAGGAATAGGTCCAAAAACGGTGGCTTGTGTTTTAATGTTCCAACTTCAGCAAGATGATTTTCCTGTGGACACCCATGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAAACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTAAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAGTGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATGTATGCAATCTGCAATGAAGTCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

167

Amino Acids

18.81

Weight (kDa)

7.01

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 380
AciI CCGC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 181
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 6 cut(s) 24, 56, 68, 118, 169, 394
AluI AGCT 6 cut(s) 24, 56, 68, 118, 169, 394
Alw21I GWGCWC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 8, 436
ApoI RAATTY 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 448
BcgI CGANNNNNNTGC 1 cut(s) 478
BciVI GTATCC 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 3 cut(s) 9, 400, 437
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 3 cut(s) 10, 401, 438
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 293, 433
Bse3DI GCAATG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 80, 156
BseNI ACTGG 2 cut(s) 293, 433
BseXI GCAGC 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 361
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 1 cut(s) 400
BspCNI CTCAG 2 cut(s) 81, 157
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 2 cut(s) 293, 433
BssMI GATC 1 cut(s) 361
BssNAI GTATAC 1 cut(s) 381
Bst1107I GTATAC 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 5 cut(s) 25, 57, 89, 124, 165
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 381
BsuI GTATCC 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 426
BveI ACCTGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 191
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 4 cut(s) 85, 257, 386, 475
DdeI CTNAG 5 cut(s) 25, 57, 89, 124, 165
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 169
EcoRV GATATC 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 4 cut(s) 88, 260, 389, 478
FaiI YATR 9 cut(s) 38, 86, 258, 281, 319, 381, 387, 476, 480
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 4 cut(s) 84, 256, 385, 474
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 3 cut(s) 9, 400, 437
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 9, 400, 437
GluI GCNGC 3 cut(s) 9, 400, 437
GsuI CTGGAG 1 cut(s) 122
Hin1II CATG 4 cut(s) 88, 260, 389, 478
HindIII AAGCTT 3 cut(s) 22, 66, 116
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 250, 381
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 2 cut(s) 250, 381
HpyAV CCTTC 2 cut(s) 103, 383
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 6 cut(s) 75, 136, 272, 408, 482, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 5 cut(s) 25, 57, 89, 124, 165
Hsp92II CATG 4 cut(s) 88, 260, 389, 478
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 86, 146, 258, 292, 306, 357, 414
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 417
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 2 cut(s) 118, 314
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 3 cut(s) 156, 356, 463
MmeI TCCRAC 3 cut(s) 247, 277, 492
MnlI CCTC 2 cut(s) 413, 448
MseI TTAA 5 cut(s) 78, 159, 215, 330, 354
MslI CAYNNNNRTG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeII GATC 1 cut(s) 361
NlaIII CATG 4 cut(s) 88, 260, 389, 478
NlaIV GGNNCC 1 cut(s) 291
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 257
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 3 cut(s) 10, 401, 438
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 5 cut(s) 78, 159, 215, 330, 354
SatI GCNGC 3 cut(s) 9, 400, 437
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 171
SetI ASST 9 cut(s) 26, 58, 70, 120, 135, 171, 193, 396, 424
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 3 cut(s) 156, 356, 463
SsiI CCGC 1 cut(s) 400
SstI GAGCTC 1 cut(s) 171
TaaI ACNGT 1 cut(s) 202
TasI AATT 3 cut(s) 156, 356, 463
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 5 cut(s) 78, 159, 215, 330, 354
Tru9I TTAA 5 cut(s) 78, 159, 215, 330, 354
TscAI CASTG 1 cut(s) 433
TseI GCWGC 2 cut(s) 8, 436
TspDTI ATGAA 4 cut(s) 168, 314, 363, 463
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.