Prupe.5G178800_v2.0.a1
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0003200
Physical Location & Seq
Reverse (-)
15066429 .. 15071496
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G178800.1

Sequence Viewer

Length: 864 bp
ATGCCGAAAAGCGGCAAAAGAAAGCAGGCTGAGGTCGAGCAGAAGCCAAAATCTGCAACCAAATCAGCCAAAACCTCCAATGGCTTGAAAGAGACCTCAAAAGACCCATACCCGAATCACCCTCGACCCACCGCAGAAGAATGTCTGTTCGTACGAGACGACCTCTTGGCCTTCCATGGCTTCCCCAAAGAATTCGCCGAGTACCGAAAGCAGAGACTGATTTCTCGAGACGCCGATGGCACCGGGATTTCAGAGCCGTCCGATCTGAAAGAAAGTGTTTTGGATGGGTTAGTGAGGACTCTGCTGTCTCAAAATACCACGGAAGTCAATTCTCAAAAAGCTTTTGCATGTCTCAAGTCCGCTTTTCCAACTTGGGAAGATGTTCTTGCTGCTGACTCGATATGCATAGAGGATGCCATAAGATGTGGAGGCTTAGCCCGGACCAAAGCTTCGTGTATTAAGAACCTACTGAGGTGTTTGCTAGAGAAAAAGGAAAAGTTGTGCTTGGAGTACTTGAGAGACTTGTCTGTTGATGAAATTAAGGCTGAGCTCTCTCATTACAAAGGAATCGGTCCCAAAACGGTTGCGTGTGTTCTGATGTTCCAACTTCAGCAAGACGATTTTCCTGTGGACACACATGTGTTTGAGATTGCAAAGGCTATGAGTTGGGTGCCAGTTGAAGCAGACAGGAACAAGACATATCTTCATCTTAACCAGCGGATCCCAAATGAACTTAAATTTGATCTCAACTGCCTCTTGTTTACACATGGTAAACTCTGCCGCAAATGCATCAAGAAAGGAGGTAACCAGCAAGGAAAAGAATCCCATGATAACTCCTGCCCTTTATTACGTTACCGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

288

Amino Acids

32.42

Weight (kDa)

8.82

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccB1I GGYRCC 2 cut(s) 239, 670
AciI CCGC 5 cut(s) 12, 132, 360, 718, 781
AclWI GGATC 2 cut(s) 715, 728
AcsI RAATTY 2 cut(s) 191, 737
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 3 cut(s) 153, 203, 512
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 2 cut(s) 88, 680
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 3 cut(s) 341, 449, 550
AluI AGCT 3 cut(s) 341, 449, 550
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 7 cut(s) 86, 150, 208, 222, 312, 356, 513
AlwI GGATC 2 cut(s) 715, 728
AlwNI CAGNNNCTG 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 191, 737
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 441, 572
AsuC2I CCSGG 2 cut(s) 244, 439
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 2 cut(s) 441, 572
BamHI GGATCC 1 cut(s) 720
BanI GGYRCC 2 cut(s) 239, 670
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 376
BccI CCATC 2 cut(s) 230, 278
BceAI ACGGC 1 cut(s) 241
BcnI CCSGG 2 cut(s) 244, 439
BcoDI GTCTC 7 cut(s) 86, 150, 208, 222, 312, 356, 513
BfaI CTAG 1 cut(s) 482
BisI GCNGC 3 cut(s) 13, 390, 781
BlpI GCTNAGC 2 cut(s) 433, 546
BlsI GCNGC 3 cut(s) 14, 391, 782
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 244, 439
Bme18I GGWCC 2 cut(s) 441, 572
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 441, 572
BmiI GGNNCC 4 cut(s) 241, 574, 672, 722
BmrFI CCNGG 2 cut(s) 244, 439
BmsI GCATC 2 cut(s) 403, 798
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 30
Bpu1102I GCTNAGC 2 cut(s) 433, 546
BpuEI CTTGAG 2 cut(s) 338, 535
BpuMI CCSGG 2 cut(s) 244, 439
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 175, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 175, 318
BseGI GGATG 2 cut(s) 289, 418
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 3 cut(s) 21, 461, 537
BseNI ACTGG 1 cut(s) 674
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 2 cut(s) 239, 670
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 2 cut(s) 243, 439
BsiWI CGTACG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 1 cut(s) 11
BsmAI GTCTC 7 cut(s) 86, 150, 208, 222, 312, 356, 513
BsmBI CGTCTC 2 cut(s) 150, 222
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 3 cut(s) 262, 720, 742
Bsp1720I GCTNAGC 2 cut(s) 433, 546
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 5 cut(s) 12, 132, 360, 718, 781
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 22, 462, 538
BspLI GGNNCC 4 cut(s) 241, 574, 672, 722
BspPI GGATC 2 cut(s) 715, 728
BspT107I GGYRCC 2 cut(s) 239, 670
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 674
BssECI CCNNGG 2 cut(s) 175, 318
BssMI GATC 3 cut(s) 262, 720, 742
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 583, 857
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 4 cut(s) 30, 433, 470, 546
BstDSI CCRYGG 2 cut(s) 175, 318
BstEII GGTNACC 1 cut(s) 803
BstF5I GGATG 2 cut(s) 289, 418
BstKTI GATC 3 cut(s) 265, 723, 745
BstMAI GTCTC 7 cut(s) 86, 150, 208, 222, 312, 356, 513
BstMBI GATC 3 cut(s) 262, 720, 742
BstMWI GCNNNNNNNGC 1 cut(s) 786
BstNSI RCATGY 2 cut(s) 351, 641
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 242, 437
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 2 cut(s) 175, 318
BtsCI GGATG 2 cut(s) 289, 418
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 441, 572
CseI GACGC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 152, 202, 511
CviAII CATG 5 cut(s) 176, 348, 638, 767, 827
CviQI GTAC 3 cut(s) 152, 202, 511
DdeI CTNAG 4 cut(s) 30, 433, 470, 546
DpnI GATC 3 cut(s) 264, 722, 744
DpnII GATC 3 cut(s) 262, 720, 742
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 441, 572
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 2 cut(s) 407, 791
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 175
Esp3I CGTCTC 2 cut(s) 150, 222
FaeI CATG 5 cut(s) 179, 351, 641, 770, 830
FalI AAGNNNNNCTT 4 cut(s) 369, 401, 488, 520
FaqI GGGAC 1 cut(s) 558
FatI CATG 5 cut(s) 175, 347, 637, 766, 826
Fnu4HI GCNGC 3 cut(s) 13, 390, 781
FokI GGATG 2 cut(s) 296, 425
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 13, 390, 781
FspBI CTAG 1 cut(s) 482
GluI GCNGC 3 cut(s) 13, 390, 781
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 243, 439
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 5 cut(s) 179, 351, 641, 770, 830
HindIII AAGCTT 2 cut(s) 339, 447
HinfI GANTC 5 cut(s) 115, 298, 395, 567, 821
HpaII CCGG 2 cut(s) 243, 439
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 3 cut(s) 631, 762, 773
Hpy188I TCNGA 4 cut(s) 253, 262, 267, 597
Hpy188III TCNNGA 3 cut(s) 225, 227, 793
Hpy8I GTNNAC 3 cut(s) 631, 762, 773
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 583, 857
HpyCH4IV ACGT 1 cut(s) 850
HpyCH4V TGCA 5 cut(s) 56, 347, 405, 653, 789
HpyF10VI GCNNNNNNNGC 1 cut(s) 786
HpyF3I CTNAG 4 cut(s) 30, 433, 470, 546
HpySE526I ACGT 1 cut(s) 850
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 5 cut(s) 179, 351, 641, 770, 830
Kzo9I GATC 3 cut(s) 262, 720, 742
LpnPI CCDG 9 cut(s) 11, 256, 452, 639, 673, 687, 728, 821, 850
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 2 cut(s) 403, 798
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 850
MaeIII GTNAC 2 cut(s) 803, 851
MalI GATC 3 cut(s) 264, 722, 744
MboI GATC 3 cut(s) 262, 720, 742
MboII GAAGA 3 cut(s) 149, 389, 695
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 4 cut(s) 191, 328, 537, 737
MlyI GAGTC 2 cut(s) 292, 389
MmeI TCCRAC 2 cut(s) 392, 628
Mph1103I ATGCAT 2 cut(s) 407, 791
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 4 cut(s) 459, 540, 711, 735
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 2 cut(s) 243, 439
MspR9I CCNGG 2 cut(s) 244, 439
MwoI GCNNNNNNNGC 1 cut(s) 786
NciI CCSGG 2 cut(s) 244, 439
NcoI CCATGG 1 cut(s) 175
NdeII GATC 3 cut(s) 262, 720, 742
NlaIII CATG 5 cut(s) 179, 351, 641, 770, 830
NlaIV GGNNCC 4 cut(s) 241, 574, 672, 722
NmeAIII GCCGAG 1 cut(s) 223
NsiI ATGCAT 2 cut(s) 407, 791
NspI RCATGY 2 cut(s) 351, 641
OliI CACNNNNGTG 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 225
PciI ACATGT 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 115, 567, 821
Pfl23II CGTACG 1 cut(s) 151
PkrI GCNGC 3 cut(s) 14, 391, 782
PleI GAGTC 2 cut(s) 292, 389
PpsI GAGTC 2 cut(s) 292, 389
PscI ACATGT 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 552
PspEI GGTNACC 1 cut(s) 803
PspLI CGTACG 1 cut(s) 151
PspN4I GGNNCC 4 cut(s) 241, 574, 672, 722
PspPI GGNCC 2 cut(s) 441, 572
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 720
RsaI GTAC 3 cut(s) 153, 203, 512
RsaNI GTAC 3 cut(s) 152, 202, 511
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 459, 540, 711, 735
SatI GCNGC 3 cut(s) 13, 390, 781
Sau3AI GATC 3 cut(s) 262, 720, 742
Sau96I GGNCC 2 cut(s) 441, 572
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 2 cut(s) 292, 389
ScrFI CCNGG 2 cut(s) 244, 439
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 403, 798
Sfr274I CTCGAG 1 cut(s) 225
SinI GGWCC 2 cut(s) 441, 572
SlaI CTCGAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 3 cut(s) 225, 353, 514
SmoI CTYRAG 3 cut(s) 225, 353, 514
Sse9I AATT 4 cut(s) 191, 328, 537, 737
SsiI CCGC 5 cut(s) 12, 132, 360, 718, 781
SspMI CTAG 1 cut(s) 482
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 242, 437
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 2 cut(s) 583, 857
TaiI ACGT 1 cut(s) 853
TaqI TCGA 4 cut(s) 36, 124, 226, 398
TaqII GACCGA 1 cut(s) 560
TasI AATT 4 cut(s) 191, 328, 537, 737
TatI WGTACW 1 cut(s) 510
TauI GCSGC 2 cut(s) 15, 783
TfiI GAWTC 3 cut(s) 115, 567, 821
Tru1I TTAA 4 cut(s) 459, 540, 711, 735
Tru9I TTAA 4 cut(s) 459, 540, 711, 735
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 549, 695, 744
TspGWI ACGGA 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 441, 572
XapI RAATTY 2 cut(s) 191, 737
XceI RCATGY 2 cut(s) 351, 641
XhoI CTCGAG 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 1 cut(s) 482
ZrmI AGTACT 1 cut(s) 512
Zsp2I ATGCAT 2 cut(s) 407, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.