Rh2DG325000
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003200
Physical Location & Seq
Forward (+)
40876459 .. 40878862
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG325000.1

Sequence Viewer

Length: 681 bp
ATGCTGAAAAGCCGCAAAAGAAAGCAGCAGGTGGAGGTTGACCACCACCCAAAACCTCCTACCAAAACACCCAAAACCACCAAAGAGACCCCAAAGGACCCATACCCGAATCACGCCCGACCCACCCGAGAAGAATGCGTGTCCGTCCTAGACGACCTCCTGGCCCTCCACGGCTTCCCCCAAGATTTCGCCAAGTACCGAGAACAGCGACTGAGTTCTCAAACATCCAACGGCTGCGACGCTGCCGTCAGTTCAGAGCCGTCGGATAAAAAAGAGAGTATCTTGGATGGTTTAGTGAGAACTTTATTGTCTCAGAATACCACGGAAGCTAATTCCCAGAAAGCCTTTGCTTCTCTCAAGTCAGCTTTTCCAACTTGGGAAGAGGTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCGAGATTTGTCAGTTGATGAAATTAAGGCTGAGCTCTCTGATTTCAAAGGAATAGGTCCAAAAACGGTAAATCTTTTGTTAGTGATGTTGAGCTGCTTTGCTTGGGTTGAGATGCTATATATGGTACTCTGGCTTATATATTTCGTTGTATGTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

226

Amino Acids

25.37

Weight (kDa)

8.06

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 99 - 157 2.8e-08 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 19, 525
AciI CCGC 1 cut(s) 13
AfaI GTAC 3 cut(s) 197, 515, 645
AgsI TTSAA 1 cut(s) 565
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 8 cut(s) 329, 365, 408, 440, 452, 502, 553, 612
AluI AGCT 8 cut(s) 329, 365, 408, 440, 452, 502, 553, 612
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 80, 315
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 5 cut(s) 25, 234, 242, 392, 612
AspS9I GGNCC 3 cut(s) 97, 163, 575
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 97, 575
BanII GRGCYC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 5 cut(s) 37, 221, 229, 379, 599
BccI CCATC 1 cut(s) 281
BceAI ACGGC 4 cut(s) 187, 230, 244, 247
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 80, 315
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 2 cut(s) 19, 525
BisI GCNGC 6 cut(s) 13, 26, 235, 243, 393, 613
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 6 cut(s) 14, 27, 236, 244, 394, 614
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 97, 575
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 97, 163, 575
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 169, 321
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 169, 321
BseGI GGATG 2 cut(s) 224, 292
BseMII CTCAG 4 cut(s) 203, 326, 464, 540
BseXI GCAGC 5 cut(s) 37, 221, 229, 379, 599
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 555
BsiHKCI CYCGRG 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 80, 315
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 555
Bsp1720I GCTNAGC 1 cut(s) 549
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 4 cut(s) 204, 325, 465, 541
BspLI GGNNCC 1 cut(s) 99
BspMI ACCTGC 2 cut(s) 19, 525
BspTNI GGTCTC 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 169, 321
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 1 cut(s) 375
BstDEI CTNAG 6 cut(s) 212, 312, 409, 441, 473, 549
BstDSI CCRYGG 2 cut(s) 169, 321
BstF5I GGATG 2 cut(s) 224, 292
BstMAI GTCTC 2 cut(s) 80, 315
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 37, 221, 229, 379, 599
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 2 cut(s) 169, 321
BtsCI GGATG 2 cut(s) 224, 292
BveI ACCTGC 2 cut(s) 19, 525
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 97, 163, 575
CseI GACGC 1 cut(s) 248
Csp6I GTAC 3 cut(s) 196, 514, 644
CviAII CATG 1 cut(s) 469
CviQI GTAC 3 cut(s) 196, 514, 644
DdeI CTNAG 6 cut(s) 212, 312, 409, 441, 473, 549
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 97, 575
Eco53kI GAGCTC 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 555
FaeI CATG 1 cut(s) 472
FaiI YATR 9 cut(s) 103, 422, 470, 637, 639, 641, 656, 658, 670
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FatI CATG 1 cut(s) 468
Fnu4HI GCNGC 6 cut(s) 13, 26, 235, 243, 393, 613
FokI GGATG 2 cut(s) 211, 299
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 6 cut(s) 13, 26, 235, 243, 393, 613
FspBI CTAG 1 cut(s) 149
GluI GCNGC 6 cut(s) 13, 26, 235, 243, 393, 613
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 164
HgaI GACGC 1 cut(s) 248
Hin1II CATG 1 cut(s) 472
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 3 cut(s) 406, 450, 500
HinfI GANTC 2 cut(s) 109, 398
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 256, 265, 315, 559
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 242, 265
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 1 cut(s) 586
HpyF3I CTNAG 6 cut(s) 212, 312, 409, 441, 473, 549
Hsp92II CATG 1 cut(s) 472
LpnPI CCDG 7 cut(s) 14, 146, 173, 350, 470, 530, 634
Lsp1109I GCAGC 5 cut(s) 37, 221, 229, 379, 599
LweI GCATC 1 cut(s) 621
MaeI CTAG 1 cut(s) 149
MboII GAAGA 3 cut(s) 143, 392, 502
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 2 cut(s) 331, 540
MmeI TCCRAC 3 cut(s) 243, 252, 395
MnlI CCTC 5 cut(s) 28, 66, 167, 176, 376
MseI TTAA 2 cut(s) 462, 543
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 161
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 1 cut(s) 99
NspI RCATGY 1 cut(s) 472
PaqCI CACCTGC 1 cut(s) 19
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 109, 398
PkrI GCNGC 6 cut(s) 14, 27, 236, 244, 394, 614
PpuMI RGGWCCY 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 97, 163, 575
PspPPI RGGWCCY 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 3 cut(s) 197, 515, 645
RsaNI GTAC 3 cut(s) 196, 514, 644
SacI GAGCTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 462, 543
SatI GCNGC 6 cut(s) 13, 26, 235, 243, 393, 613
Sau96I GGNCC 3 cut(s) 97, 163, 575
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 1 cut(s) 621
SinI GGWCC 2 cut(s) 97, 575
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 2 cut(s) 331, 540
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 586
TasI AATT 2 cut(s) 331, 540
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 109, 398
Tru1I TTAA 2 cut(s) 462, 543
Tru9I TTAA 2 cut(s) 462, 543
TseI GCWGC 5 cut(s) 25, 234, 242, 392, 612
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 2 cut(s) 133, 338
VpaK11BI GGWCC 2 cut(s) 97, 575
XceI RCATGY 1 cut(s) 472
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.