Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005329.1

Orthogroup ID

OG0003200

Physical Location & Seq

Genomic Coordinates Reverse (-)

156619 .. 157737

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005329.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgccgaaaagccgcaaaagaaggcagcaggtggaggttgaccaccacccaaaacctccaaccaaaacacccaaaaccaccaaagagacgccaagggacccatacccgaatcacgcccgacccacccgagaagaatgcgtgtccgtccgagacgacctcttggccctccacggcttcccccaagagttcgccaagtaccgagaacagcgactgagttctcaagcatccaacggctgcgtccctgccgtcagttcagagccgtcggatgaaaaagaggtgaactggttgggaaaaattcggcatcaaaacatcatcaaacttttgggttactgtgttcatggaaaaacaaggtttcttgtgtatgaaatgatgcagaatggctccttacaaactcaattgtatggtatgaactttctattgaaggaaaagctttgcttggagtacctgcgagatttgtcagttgatgaaattaaggctgagctctctcatttcaaaggaataggtccaaaaacggtggcttgtgttttaatgttccaacttcagcaagatgattttcctgtggacacccatgtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctgtatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaaaaggaatccgaggatatcaattcctgtcctttggtacgttactgcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

268

Amino Acids

30.89

Weight (kDa)

8.9

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47830
fragaria_vesca	FvH4_5g16440 FvH4_5g16440 FvH4_5g16440
malus_domestica	MD06G1180800.v1.1
prunus_persica	Prupe.5G178800_v2.0.a1
pyrus_communis	pycom06g15990
rosa_chinensis	RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661
rosa_laevigata	RLG00000005332 RLG00000018712
rosa_multiflora	Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121220
rosa_rugosa	Rorug06G0427000 Rorug06G0427000 Rorug06G0427100
rosa_samantha	Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400
rosa_wichuraiana	Rw0G007640 Rw7G002140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	2 cut(s)	19, 453
AccI	GTMKAC	1 cut(s)	692
AciI	CCGC	2 cut(s)	13, 712
AcsI	RAATTY	2 cut(s)	294, 668
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	3 cut(s)	197, 443, 792
AgsI	TTSAA	2 cut(s)	421, 493
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	3 cut(s)	430, 481, 706
AluI	AGCT	3 cut(s)	430, 481, 706
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	80, 144
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	25, 234, 748
ApoI	RAATTY	2 cut(s)	294, 668
AspS9I	GGNCC	3 cut(s)	97, 163, 503
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	97, 503
BanII	GRGCYC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	3 cut(s)	37, 221, 760
BceAI	ACGGC	4 cut(s)	187, 230, 244, 247
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciVI	GTATCC	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	80, 144
BfuAI	ACCTGC	2 cut(s)	19, 453
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	5 cut(s)	13, 26, 235, 712, 749
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	5 cut(s)	14, 27, 236, 713, 750
Bme18I	GGWCC	2 cut(s)	97, 503
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	97, 163, 503
BmiI	GGNNCC	4 cut(s)	98, 99, 382, 603
BmsI	GCATC	4 cut(s)	233, 310, 360, 729
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	92, 169, 765
Bse1I	ACTGG	3 cut(s)	287, 605, 745
BseDI	CCNNGG	3 cut(s)	92, 169, 765
BseGI	GGATG	2 cut(s)	224, 271
BseMII	CTCAG	2 cut(s)	203, 468
BseNI	ACTGG	3 cut(s)	287, 605, 745
BseXI	GCAGC	3 cut(s)	37, 221, 760
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	110, 224
BsmAI	GTCTC	2 cut(s)	80, 144
BsmBI	CGTCTC	2 cut(s)	80, 144
BsmFI	GGGAC	2 cut(s)	110, 224
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	1 cut(s)	673
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	13, 712
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	204, 469
BspLI	GGNNCC	4 cut(s)	98, 99, 382, 603
BspMI	ACCTGC	2 cut(s)	19, 453
BsrI	ACTGG	3 cut(s)	287, 605, 745
BssECI	CCNNGG	3 cut(s)	92, 169, 765
BssMI	GATC	1 cut(s)	673
BssNAI	GTATAC	1 cut(s)	693
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	92
Bst1107I	GTATAC	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	332, 514
BstACI	GRCGYC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	212, 477
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	224, 271
BstKTI	GATC	1 cut(s)	676
BstMAI	GTCTC	2 cut(s)	80, 144
BstMBI	GATC	1 cut(s)	673
BstMWI	GCNNNNNNNGC	1 cut(s)	717
BstV1I	GCAGC	3 cut(s)	37, 221, 760
BstZ17I	GTATAC	1 cut(s)	693
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	224, 271
BtsIMutI	CAGTG	1 cut(s)	738
BveI	ACCTGC	2 cut(s)	19, 453
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	97, 163, 503
CseI	GACGC	2 cut(s)	97, 226
Csp6I	GTAC	3 cut(s)	196, 442, 791
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	3 cut(s)	338, 569, 698
CviQI	GTAC	3 cut(s)	196, 442, 791
DdeI	CTNAG	2 cut(s)	212, 477
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	2 cut(s)	97, 503
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	92
Esp3I	CGTCTC	2 cut(s)	80, 144
FaeI	CATG	3 cut(s)	341, 572, 701
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	2 cut(s)	110, 224
FatI	CATG	3 cut(s)	337, 568, 697
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	5 cut(s)	13, 26, 235, 712, 749
FokI	GGATG	2 cut(s)	211, 278
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	5 cut(s)	13, 26, 235, 712, 749
GluI	GCNGC	5 cut(s)	13, 26, 235, 712, 749
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	2 cut(s)	97, 226
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	341, 572, 701
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	109, 761
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	4 cut(s)	40, 280, 562, 693
Hpy188I	TCNGA	5 cut(s)	149, 256, 265, 678, 766
Hpy188III	TCNNGA	1 cut(s)	724
Hpy8I	GTNNAC	4 cut(s)	40, 280, 562, 693
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	15, 415, 695
HpyCH4III	ACNGT	2 cut(s)	332, 514
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	4 cut(s)	373, 584, 720, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	717
HpyF3I	CTNAG	2 cut(s)	212, 477
HpySE526I	ACGT	1 cut(s)	793
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	341, 572, 701
KflI	GGGWCCC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	673
LmnI	GCTCC	2 cut(s)	386, 611
Lsp1109I	GCAGC	3 cut(s)	37, 221, 760
LweI	GCATC	4 cut(s)	233, 310, 360, 729
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	2 cut(s)	326, 794
MalI	GATC	1 cut(s)	675
MboI	GATC	1 cut(s)	673
MboII	GAAGA	2 cut(s)	143, 626
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	5 cut(s)	294, 395, 468, 668, 775
MmeI	TCCRAC	5 cut(s)	83, 243, 252, 559, 589
MnlI	CCTC	7 cut(s)	28, 66, 167, 176, 268, 725, 760
MseI	TTAA	4 cut(s)	471, 527, 642, 666
MslI	CAYNNNNRTG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	717
NdeII	GATC	1 cut(s)	673
NlaIII	CATG	3 cut(s)	341, 572, 701
NlaIV	GGNNCC	4 cut(s)	98, 99, 382, 603
OliI	CACNNNNGTG	1 cut(s)	569
PaqCI	CACCTGC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	109, 761
PkrI	GCNGC	5 cut(s)	14, 27, 236, 713, 750
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	97
PspN4I	GGNNCC	4 cut(s)	98, 99, 382, 603
PspPI	GGNCC	3 cut(s)	97, 163, 503
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	3 cut(s)	197, 443, 792
RsaNI	GTAC	3 cut(s)	196, 442, 791
RseI	CAYNNNNRTG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	471, 527, 642, 666
SatI	GCNGC	5 cut(s)	13, 26, 235, 712, 749
Sau3AI	GATC	1 cut(s)	673
Sau96I	GGNCC	3 cut(s)	97, 163, 503
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	4 cut(s)	233, 310, 360, 729
SinI	GGWCC	2 cut(s)	97, 503
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	5 cut(s)	294, 395, 468, 668, 775
SsiI	CCGC	2 cut(s)	13, 712
SstI	GAGCTC	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	332, 514
TaiI	ACGT	1 cut(s)	796
TasI	AATT	5 cut(s)	294, 395, 468, 668, 775
TauI	GCSGC	2 cut(s)	15, 714
TfiI	GAWTC	2 cut(s)	109, 761
Tru1I	TTAA	4 cut(s)	471, 527, 642, 666
Tru9I	TTAA	4 cut(s)	471, 527, 642, 666
TscAI	CASTG	1 cut(s)	745
TseI	GCWGC	3 cut(s)	25, 234, 748
TspDTI	ATGAA	7 cut(s)	282, 326, 378, 422, 480, 626, 675
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	745
VpaK11BI	GGWCC	2 cut(s)	97, 503
XapI	RAATTY	2 cut(s)	294, 668
XmiI	GTMKAC	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.