HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47830 |
| fragaria_vesca | FvH4_5g16440 FvH4_5g16440 FvH4_5g16440 |
| malus_domestica | MD06G1180800.v1.1 |
| prunus_persica | Prupe.5G178800_v2.0.a1 |
| pyrus_communis | pycom06g15990 |
| rosa_chinensis | RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661 |
| rosa_laevigata | RLG00000005332 RLG00000018712 |
| rosa_multiflora | Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00121220 |
| rosa_rugosa | Rorug06G0427000 Rorug06G0427000 Rorug06G0427100 |
| rosa_samantha | Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400 |
| rosa_wichuraiana | Rw0G007640 Rw7G002140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 19 |
| Acc36I | ACCTGC | 1 cut(s) | 19 |
| AciI | CCGC | 1 cut(s) | 13 |
| AcyI | GRCGYC | 1 cut(s) | 89 |
| AfaI | GTAC | 1 cut(s) | 197 |
| AluBI | AGCT | 2 cut(s) | 329, 365 |
| AluI | AGCT | 2 cut(s) | 329, 365 |
| Alw26I | GTCTC | 3 cut(s) | 80, 144, 315 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 211 |
| Ama87I | CYCGRG | 1 cut(s) | 126 |
| AoxI | GGCC | 1 cut(s) | 162 |
| ApeKI | GCWGC | 3 cut(s) | 25, 234, 242 |
| AspS9I | GGNCC | 2 cut(s) | 97, 163 |
| AvaI | CYCGRG | 1 cut(s) | 126 |
| AvaII | GGWCC | 1 cut(s) | 97 |
| BbvI | GCAGC | 3 cut(s) | 37, 221, 229 |
| BccI | CCATC | 1 cut(s) | 281 |
| BceAI | ACGGC | 4 cut(s) | 187, 230, 244, 247 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 117, 151 |
| BcoDI | GTCTC | 3 cut(s) | 80, 144, 315 |
| BfuAI | ACCTGC | 1 cut(s) | 19 |
| BisI | GCNGC | 4 cut(s) | 13, 26, 235, 243 |
| BlsI | GCNGC | 4 cut(s) | 14, 27, 236, 244 |
| Bme18I | GGWCC | 1 cut(s) | 97 |
| BmeT110I | CYCGRG | 1 cut(s) | 126 |
| BmgT120I | GGNCC | 2 cut(s) | 97, 163 |
| BmiI | GGNNCC | 1 cut(s) | 99 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 141, 173 |
| BpuEI | CTTGAG | 1 cut(s) | 341 |
| BsaHI | GRCGYC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 2 cut(s) | 169, 321 |
| BseDI | CCNNGG | 2 cut(s) | 169, 321 |
| BseGI | GGATG | 3 cut(s) | 224, 271, 292 |
| BseMII | CTCAG | 2 cut(s) | 203, 326 |
| BseXI | GCAGC | 3 cut(s) | 37, 221, 229 |
| BshFI | GGCC | 1 cut(s) | 164 |
| BsiHKCI | CYCGRG | 1 cut(s) | 126 |
| BsmAI | GTCTC | 3 cut(s) | 80, 144, 315 |
| BsmBI | CGTCTC | 2 cut(s) | 80, 144 |
| BsmI | GAATGC | 1 cut(s) | 140 |
| BsnI | GGCC | 1 cut(s) | 164 |
| BsoBI | CYCGRG | 1 cut(s) | 126 |
| BspACI | CCGC | 1 cut(s) | 13 |
| BspANI | GGCC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 2 cut(s) | 204, 325 |
| BspLI | GGNNCC | 1 cut(s) | 99 |
| BspMI | ACCTGC | 1 cut(s) | 19 |
| BssECI | CCNNGG | 2 cut(s) | 169, 321 |
| BssNI | GRCGYC | 1 cut(s) | 89 |
| Bst6I | CTCTTC | 1 cut(s) | 375 |
| BstACI | GRCGYC | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 212, 312 |
| BstDSI | CCRYGG | 2 cut(s) | 169, 321 |
| BstF5I | GGATG | 3 cut(s) | 224, 271, 292 |
| BstMAI | GTCTC | 3 cut(s) | 80, 144, 315 |
| BstV1I | GCAGC | 3 cut(s) | 37, 221, 229 |
| BsuRI | GGCC | 1 cut(s) | 164 |
| BtgI | CCRYGG | 2 cut(s) | 169, 321 |
| BtsCI | GGATG | 3 cut(s) | 224, 271, 292 |
| BveI | ACCTGC | 1 cut(s) | 19 |
| CaiI | CAGNNNCTG | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 2 cut(s) | 97, 163 |
| CseI | GACGC | 2 cut(s) | 97, 248 |
| Csp6I | GTAC | 1 cut(s) | 196 |
| CviJI | RGCY | 8 cut(s) | 12, 164, 174, 234, 259, 329, 344, 365 |
| CviKI_1 | RGCY | 8 cut(s) | 12, 164, 174, 234, 259, 329, 344, 365 |
| CviQI | GTAC | 1 cut(s) | 196 |
| DdeI | CTNAG | 2 cut(s) | 212, 312 |
| Eam1104I | CTCTTC | 1 cut(s) | 375 |
| EarI | CTCTTC | 1 cut(s) | 375 |
| Eco47I | GGWCC | 1 cut(s) | 97 |
| Eco88I | CYCGRG | 1 cut(s) | 126 |
| EcoO109I | RGGNCCY | 1 cut(s) | 97 |
| Esp3I | CGTCTC | 2 cut(s) | 80, 144 |
| FaiI | YATR | 1 cut(s) | 103 |
| Fnu4HI | GCNGC | 4 cut(s) | 13, 26, 235, 243 |
| FokI | GGATG | 3 cut(s) | 211, 278, 299 |
| Fsp4HI | GCNGC | 4 cut(s) | 13, 26, 235, 243 |
| GluI | GCNGC | 4 cut(s) | 13, 26, 235, 243 |
| HaeIII | GGCC | 1 cut(s) | 164 |
| HgaI | GACGC | 2 cut(s) | 97, 248 |
| Hin1I | GRCGYC | 1 cut(s) | 89 |
| HincII | GTYRAC | 1 cut(s) | 40 |
| HindII | GTYRAC | 1 cut(s) | 40 |
| HinfI | GANTC | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 4 cut(s) | 149, 256, 265, 315 |
| Hpy8I | GTNNAC | 1 cut(s) | 40 |
| Hpy99I | CGWCG | 2 cut(s) | 242, 265 |
| HpyF3I | CTNAG | 2 cut(s) | 212, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 89 |
| LpnPI | CCDG | 2 cut(s) | 14, 350 |
| Lsp1109I | GCAGC | 3 cut(s) | 37, 221, 229 |
| MboII | GAAGA | 2 cut(s) | 143, 392 |
| MluCI | AATT | 1 cut(s) | 331 |
| MmeI | TCCRAC | 4 cut(s) | 83, 243, 252, 395 |
| MnlI | CCTC | 5 cut(s) | 28, 66, 167, 176, 376 |
| Mva1269I | GAATGC | 1 cut(s) | 140 |
| NlaIV | GGNNCC | 1 cut(s) | 99 |
| PaqCI | CACCTGC | 1 cut(s) | 19 |
| PctI | GAATGC | 1 cut(s) | 140 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PkrI | GCNGC | 4 cut(s) | 14, 27, 236, 244 |
| PpuMI | RGGWCCY | 1 cut(s) | 97 |
| Psp5II | RGGWCCY | 1 cut(s) | 97 |
| PspN4I | GGNNCC | 1 cut(s) | 99 |
| PspPI | GGNCC | 2 cut(s) | 97, 163 |
| PspPPI | RGGWCCY | 1 cut(s) | 97 |
| PstNI | CAGNNNCTG | 1 cut(s) | 211 |
| RsaI | GTAC | 1 cut(s) | 197 |
| RsaNI | GTAC | 1 cut(s) | 196 |
| SatI | GCNGC | 4 cut(s) | 13, 26, 235, 243 |
| Sau96I | GGNCC | 2 cut(s) | 97, 163 |
| SetI | ASST | 7 cut(s) | 33, 39, 58, 159, 331, 367, 387 |
| SinI | GGWCC | 1 cut(s) | 97 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| Sse9I | AATT | 1 cut(s) | 331 |
| SsiI | CCGC | 1 cut(s) | 13 |
| TasI | AATT | 1 cut(s) | 331 |
| TauI | GCSGC | 1 cut(s) | 15 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| TseI | GCWGC | 3 cut(s) | 25, 234, 242 |
| TspDTI | ATGAA | 1 cut(s) | 282 |
| TspGWI | ACGGA | 2 cut(s) | 133, 338 |
| VpaK11BI | GGWCC | 1 cut(s) | 97 |