RLG00000005332
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003200
Physical Location & Seq
Forward (+)
66853347 .. 66854649
1303 bp
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UTR
Exon/CDS
Intron
RLM00000005332

Sequence Viewer

Length: 879 bp
ATGCCGAAAAGCCTCAAAAGAAAGCAGCAGGTGGAGGTTGACCACCACCCAAAACCTCCAACCAAAACACCCAAAACCACCAAAGAGACCCCAAAGGACCCATACCCGAATCACGCCCGACCCACCCGAGAAGAATGCGTGTCCGTCCGAGACGACCTCTTGGCCCTCCACGGCTTCCCCCAAGAGTTCGCTAAGTACCGAGAACAGCGACTGTGTTCTCAAACATCCAACGGCTGCGACGTTGCCGTCAGTTCAGAGCCGTCGGATGAAAAGGAGAGTGTCTTGGATGGTTTAGTGAGAACTCTATTGTCTCAGAATACCACGGAAGATAATTCCCAGAAAGCCTTTGCTTCTCTCAAGTCAGCTTTTCCAACTTGGGAAGAGGTTTTGGCTGCTGATTCACAAAGATTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCGAGATTTGTCAGTTGATGAAATTAAGGCTGAGCTCTCTAATTTCAAAGGAATAGGTCCAAAAACGGTGGCTTGTGTTTTAATGTTCCAACTTCAGCGAGATGATTTTCCTGTGGATACCCATGTGTTTGAAATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAATGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATCCGAGGATATCAATTCCTGCCCTTTGTTGCGTTACTGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

293

Amino Acids

32.99

Weight (kDa)

8.33

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 99 - 243 2.7e-12 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 19, 525
AccI GTMKAC 1 cut(s) 764
AciI CCGC 1 cut(s) 784
AcsI RAATTY 1 cut(s) 740
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 2 cut(s) 197, 515
AgsI TTSAA 2 cut(s) 565, 650
AluBI AGCT 6 cut(s) 365, 440, 452, 502, 553, 778
AluI AGCT 6 cut(s) 365, 440, 452, 502, 553, 778
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 3 cut(s) 80, 144, 315
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 4 cut(s) 25, 234, 392, 820
ApoI RAATTY 1 cut(s) 740
AspS9I GGNCC 3 cut(s) 97, 163, 575
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 97, 575
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BanII GRGCYC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 4 cut(s) 37, 221, 379, 832
BccI CCATC 1 cut(s) 281
BceAI ACGGC 4 cut(s) 187, 230, 244, 247
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BciVI GTATCC 2 cut(s) 628, 717
BcoDI GTCTC 3 cut(s) 80, 144, 315
BfuAI ACCTGC 2 cut(s) 19, 525
BfuI GTATCC 2 cut(s) 628, 717
BisI GCNGC 5 cut(s) 26, 235, 393, 784, 821
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 5 cut(s) 27, 236, 394, 785, 822
Bme18I GGWCC 2 cut(s) 97, 575
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 97, 163, 575
BmiI GGNNCC 2 cut(s) 99, 675
BmsI GCATC 1 cut(s) 801
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 169, 321, 837
Bse1I ACTGG 2 cut(s) 677, 817
BseDI CCNNGG 3 cut(s) 169, 321, 837
BseGI GGATG 3 cut(s) 224, 271, 292
BseMII CTCAG 3 cut(s) 326, 464, 540
BseNI ACTGG 2 cut(s) 677, 817
BseXI GCAGC 4 cut(s) 37, 221, 379, 832
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 555
BsiHKCI CYCGRG 1 cut(s) 126
BsmAI GTCTC 3 cut(s) 80, 144, 315
BsmBI CGTCTC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 1 cut(s) 745
Bsp1720I GCTNAGC 1 cut(s) 549
BspACI CCGC 1 cut(s) 784
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 325, 465, 541
BspLI GGNNCC 2 cut(s) 99, 675
BspMI ACCTGC 2 cut(s) 19, 525
BspTNI GGTCTC 1 cut(s) 80
BsrI ACTGG 2 cut(s) 677, 817
BssECI CCNNGG 3 cut(s) 169, 321, 837
BssMI GATC 1 cut(s) 745
BssNAI GTATAC 1 cut(s) 765
Bst1107I GTATAC 1 cut(s) 765
Bst4CI ACNGT 3 cut(s) 213, 586, 872
Bst6I CTCTTC 1 cut(s) 375
BstDEI CTNAG 5 cut(s) 192, 312, 441, 473, 549
BstDSI CCRYGG 2 cut(s) 169, 321
BstF5I GGATG 3 cut(s) 224, 271, 292
BstKTI GATC 1 cut(s) 748
BstMAI GTCTC 3 cut(s) 80, 144, 315
BstMBI GATC 1 cut(s) 745
BstMWI GCNNNNNNNGC 1 cut(s) 789
BstNSI RCATGY 1 cut(s) 472
BstV1I GCAGC 4 cut(s) 37, 221, 379, 832
BstZ17I GTATAC 1 cut(s) 765
BsuI GTATCC 2 cut(s) 628, 717
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 2 cut(s) 169, 321
BtsCI GGATG 3 cut(s) 224, 271, 292
BtsIMutI CAGTG 1 cut(s) 810
BveI ACCTGC 2 cut(s) 19, 525
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 97, 163, 575
Csp6I GTAC 2 cut(s) 196, 514
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 3 cut(s) 469, 641, 770
CviQI GTAC 2 cut(s) 196, 514
DdeI CTNAG 5 cut(s) 192, 312, 441, 473, 549
DpnI GATC 1 cut(s) 747
DpnII GATC 1 cut(s) 745
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 97, 575
Eco53kI GAGCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 97
EcoRV GATATC 1 cut(s) 844
EcoT22I ATGCAT 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 3 cut(s) 472, 644, 773
FaiI YATR 8 cut(s) 103, 422, 470, 642, 665, 703, 765, 771
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FatI CATG 3 cut(s) 468, 640, 769
FblI GTMKAC 1 cut(s) 764
Fnu4HI GCNGC 5 cut(s) 26, 235, 393, 784, 821
FokI GGATG 3 cut(s) 211, 278, 299
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 5 cut(s) 26, 235, 393, 784, 821
GluI GCNGC 5 cut(s) 26, 235, 393, 784, 821
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 3 cut(s) 472, 644, 773
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 2 cut(s) 450, 500
HinfI GANTC 3 cut(s) 109, 398, 833
Hpy166II GTNNAC 2 cut(s) 40, 765
Hpy188I TCNGA 6 cut(s) 149, 256, 265, 315, 750, 838
Hpy188III TCNNGA 1 cut(s) 796
Hpy8I GTNNAC 2 cut(s) 40, 765
Hpy99I CGWCG 2 cut(s) 242, 265
HpyAV CCTTC 2 cut(s) 487, 767
HpyCH4III ACNGT 3 cut(s) 213, 586, 872
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 656, 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 789
HpyF3I CTNAG 5 cut(s) 192, 312, 441, 473, 549
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 472, 644, 773
Kzo9I GATC 1 cut(s) 745
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 4 cut(s) 37, 221, 379, 832
LweI GCATC 1 cut(s) 801
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 866
MalI GATC 1 cut(s) 747
MboI GATC 1 cut(s) 745
MboII GAAGA 5 cut(s) 143, 338, 392, 502, 698
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 6 cut(s) 331, 540, 559, 651, 740, 847
MmeI TCCRAC 6 cut(s) 83, 243, 252, 395, 631, 661
MnlI CCTC 8 cut(s) 23, 28, 66, 167, 176, 376, 797, 832
Mph1103I ATGCAT 1 cut(s) 794
MseI TTAA 5 cut(s) 462, 543, 599, 714, 738
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 789
NdeII GATC 1 cut(s) 745
NlaIII CATG 3 cut(s) 472, 644, 773
NlaIV GGNNCC 2 cut(s) 99, 675
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 1 cut(s) 472
PaqCI CACCTGC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 3 cut(s) 109, 398, 833
PkrI GCNGC 5 cut(s) 27, 236, 394, 785, 822
PpuMI RGGWCCY 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 99, 675
PspPI GGNCC 3 cut(s) 97, 163, 575
PspPPI RGGWCCY 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 2 cut(s) 197, 515
RsaNI GTAC 2 cut(s) 196, 514
SacI GAGCTC 1 cut(s) 555
SaqAI TTAA 5 cut(s) 462, 543, 599, 714, 738
SatI GCNGC 5 cut(s) 26, 235, 393, 784, 821
Sau3AI GATC 1 cut(s) 745
Sau96I GGNCC 3 cut(s) 97, 163, 575
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 1 cut(s) 801
SinI GGWCC 2 cut(s) 97, 575
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 6 cut(s) 331, 540, 559, 651, 740, 847
SsiI CCGC 1 cut(s) 784
SstI GAGCTC 1 cut(s) 555
TaaI ACNGT 3 cut(s) 213, 586, 872
TaiI ACGT 1 cut(s) 243
TasI AATT 6 cut(s) 331, 540, 559, 651, 740, 847
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 3 cut(s) 109, 398, 833
Tru1I TTAA 5 cut(s) 462, 543, 599, 714, 738
Tru9I TTAA 5 cut(s) 462, 543, 599, 714, 738
TscAI CASTG 1 cut(s) 817
TseI GCWGC 4 cut(s) 25, 234, 392, 820
TspDTI ATGAA 4 cut(s) 282, 552, 698, 747
TspGWI ACGGA 2 cut(s) 133, 338
TspRI CASTG 1 cut(s) 817
VpaK11BI GGWCC 2 cut(s) 97, 575
XapI RAATTY 1 cut(s) 740
XceI RCATGY 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 764
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.