Rh7AG230200
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003200
Physical Location & Seq
Reverse (-)
21881488 .. 21882253
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG230200.1

Sequence Viewer

Length: 561 bp
ATGAAGGTTTTGGCTGCTGATTCAGAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCGAGATTTGTCAGTTGATGAAATTAAGACTGAGCTCTCTCATTTTAAAGGAATAGGTCCAAAAACGGTGGCTTGTGTTTTAATGTTCCAACTTCAGCAAGATGATTTTCCTGTGGACACCCATGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAAGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAGTGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATCCGAGGATATCAATTCCTGTCCTTTGTTACGTTACTGTAAGTTGTCTCCCTTAAGGTTGAGAGAGAAGAGCATCTTCGTTTTAAGAAAGTGGAGATTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

186

Amino Acids

21.29

Weight (kDa)

8.96

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 3 - 117 1e-05 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 386
AciI CCGC 1 cut(s) 406
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 137
AflII CTTAAG 1 cut(s) 508
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 6 cut(s) 30, 62, 74, 124, 175, 400
AluI AGCT 6 cut(s) 30, 62, 74, 124, 175, 400
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 14, 442
ApoI RAATTY 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 454
BciVI GTATCC 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 507
BfrI CTTAAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 339
BisI GCNGC 3 cut(s) 15, 406, 443
BlsI GCNGC 3 cut(s) 16, 407, 444
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 297
BmsI GCATC 2 cut(s) 423, 537
BpmI CTGGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 459
Bse1I ACTGG 2 cut(s) 299, 439
BseDI CCNNGG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 86, 162
BseNI ACTGG 2 cut(s) 299, 439
BseXI GCAGC 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 87, 163
BspLI GGNNCC 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 508
BsrI ACTGG 2 cut(s) 299, 439
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 1 cut(s) 367
BssNAI GTATAC 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 208, 494
Bst6I CTCTTC 1 cut(s) 518
BstAFI CTTAAG 1 cut(s) 508
BstDEI CTNAG 4 cut(s) 31, 63, 95, 171
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 454
BstZ17I GTATAC 1 cut(s) 387
BsuI GTATCC 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 432
BveI ACCTGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 3 cut(s) 91, 263, 392
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 4 cut(s) 31, 63, 95, 171
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 175
EcoRV GATATC 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 3 cut(s) 94, 266, 395
FaiI YATR 8 cut(s) 44, 92, 264, 287, 325, 387, 393, 556
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 515, 547
FatI CATG 3 cut(s) 90, 262, 391
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 3 cut(s) 15, 406, 443
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 15, 406, 443
GluI GCNGC 3 cut(s) 15, 406, 443
GsuI CTGGAG 1 cut(s) 128
Hin1II CATG 3 cut(s) 94, 266, 395
HindIII AAGCTT 3 cut(s) 28, 72, 122
HinfI GANTC 2 cut(s) 20, 455
Hpy166II GTNNAC 2 cut(s) 256, 387
Hpy188I TCNGA 3 cut(s) 25, 372, 460
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 2 cut(s) 256, 387
HpyAV CCTTC 2 cut(s) 109, 389
HpyCH4III ACNGT 2 cut(s) 208, 494
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 2 cut(s) 278, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 4 cut(s) 31, 63, 95, 171
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 3 cut(s) 94, 266, 395
Kzo9I GATC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 518
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 7 cut(s) 92, 152, 264, 312, 363, 420, 487
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 2 cut(s) 423, 537
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 483, 488
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 4 cut(s) 124, 320, 523, 535
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 162, 362, 469
MmeI TCCRAC 2 cut(s) 253, 283
MnlI CCTC 2 cut(s) 419, 454
MseI TTAA 8 cut(s) 84, 165, 186, 221, 336, 360, 509, 539
MslI CAYNNNNRTG 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 411
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 94, 266, 395
NlaIV GGNNCC 1 cut(s) 297
NspI RCATGY 1 cut(s) 94
OliI CACNNNNGTG 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 20, 455
PkrI GCNGC 3 cut(s) 16, 407, 444
Psp124BI GAGCTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 518
SaqAI TTAA 8 cut(s) 84, 165, 186, 221, 336, 360, 509, 539
SatI GCNGC 3 cut(s) 15, 406, 443
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 2 cut(s) 423, 537
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 3 cut(s) 162, 362, 469
SsiI CCGC 1 cut(s) 406
SstI GAGCTC 1 cut(s) 177
TaaI ACNGT 2 cut(s) 208, 494
TaiI ACGT 1 cut(s) 490
TasI AATT 3 cut(s) 162, 362, 469
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 2 cut(s) 20, 455
Tru1I TTAA 8 cut(s) 84, 165, 186, 221, 336, 360, 509, 539
Tru9I TTAA 8 cut(s) 84, 165, 186, 221, 336, 360, 509, 539
TscAI CASTG 1 cut(s) 439
TseI GCWGC 2 cut(s) 14, 442
TspDTI ATGAA 4 cut(s) 17, 174, 320, 369
TspRI CASTG 1 cut(s) 439
Vha464I CTTAAG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.