FvH4_5g16440
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003200
Physical Location & Seq
Forward (+)
9357295 .. 9359129
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16440.t1

Sequence Viewer

Length: 861 bp
ATGCCGAAAAACCGCAAAAGAAAGGAGCAGGCGGAGGCTGACCACAACCCAAAACTTCCAACCAAAACCACCCCAAAAGACCCGTATCCGAATCACGCCCGACCCACCAGAGAAGAATGCGTGTCCGTCCGAGACGACCTGTTGGCCCTCCACGGCTTCCCCAAAGAGTTCGCAAAGTACCGAGAACAGCGACTGAGTTCTCAAGCATCCAATGGCCACGACAATGATGTCAGCTCAGAACCGTTGGATGAAAAAGAGAGTGTCTTGGATGGTTTGGTAAGAACTCTGCTGTCCCAGAATACCACGGAATCCAATTCACTAAAGGCGTTTGCTTCTCTCAAGTCAGCTTTCCCAACATGGGAAGAGGTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCCAAGACAAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTACTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACTTGCGAGATTTGTCAGTAGATGAAATAAAGGCTGAGCTCTCTCATTTCAAAGGAATAGGTCCAAAAACGGTGGCTTGTGTTCTAATGTTCCAACTACAGCAAGATGATTTTCCTGTGGACACCCATGTGTATGAGATTGCAAAGGCTATGGCCTGGGTTCCAGTTGGAGCAGATAGGAATAAGACATATCTTCATCTTAACCAATGGATACCGGACGAACTTAAATTTGATCTAAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAATGCATCAAGAAAGGAGGTAGCACCGGTAAGCAACAAGAAAAGGAATCTGAGGATAGTAATTCCTGTCCTTTGTTGCGTTACTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

287

Amino Acids

32.26

Weight (kDa)

7.94

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 93 - 237 5e-12 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 746
AciI CCGC 3 cut(s) 13, 32, 766
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 722
AfaI GTAC 2 cut(s) 179, 497
AfiI CCNNNNNNNGG 1 cut(s) 358
AgeI ACCGGT 1 cut(s) 794
AgsI TTSAA 1 cut(s) 547
AjnI CCWGG 1 cut(s) 650
AleI CACNNNNGTG 1 cut(s) 623
AluBI AGCT 7 cut(s) 234, 347, 390, 434, 484, 535, 760
AluI AGCT 7 cut(s) 234, 347, 390, 434, 484, 535, 760
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 3 cut(s) 144, 214, 648
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 722
AsiGI ACCGGT 1 cut(s) 794
AspS9I GGNCC 2 cut(s) 145, 557
AvaII GGWCC 1 cut(s) 557
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 652
BciVI GTATCC 2 cut(s) 96, 699
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 593
BfuI GTATCC 2 cut(s) 96, 699
BisI GCNGC 2 cut(s) 375, 766
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 2 cut(s) 376, 767
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 652
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 145, 557
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 1 cut(s) 652
BmsI GCATC 2 cut(s) 215, 783
BpmI CTGGAG 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 186, 323
BsaJI CCNNGG 3 cut(s) 151, 303, 651
BsaWI WCCGGW 2 cut(s) 709, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 2 cut(s) 471, 659
BseBI CCWGG 1 cut(s) 652
BseDI CCNNGG 3 cut(s) 151, 303, 651
BseGI GGATG 3 cut(s) 206, 253, 274
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 5 cut(s) 185, 249, 446, 522, 810
BseNI ACTGG 2 cut(s) 471, 659
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 3 cut(s) 146, 216, 650
BshTI ACCGGT 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 2 cut(s) 710, 795
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 126
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 3 cut(s) 146, 216, 650
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 1 cut(s) 727
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 3 cut(s) 13, 32, 766
BspANI GGCC 3 cut(s) 146, 216, 650
BspCNI CTCAG 5 cut(s) 186, 248, 447, 523, 811
BspLI GGNNCC 1 cut(s) 657
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 2 cut(s) 471, 659
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 3 cut(s) 151, 303, 651
BssMI GATC 1 cut(s) 727
BssNAI GTATAC 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 747
Bst2UI CCWGG 1 cut(s) 652
Bst4CI ACNGT 2 cut(s) 243, 568
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 6 cut(s) 194, 235, 391, 455, 531, 819
BstDSI CCRYGG 2 cut(s) 151, 303
BstF5I GGATG 3 cut(s) 206, 253, 274
BstKTI GATC 1 cut(s) 730
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 727
BstMWI GCNNNNNNNGC 1 cut(s) 771
BstNI CCWGG 1 cut(s) 652
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 650
BstSFI CTRYAG 1 cut(s) 593
BstV1I GCAGC 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 747
BsuI GTATCC 2 cut(s) 96, 699
BsuRI GGCC 3 cut(s) 146, 216, 650
BtgI CCRYGG 2 cut(s) 151, 303
BtsCI GGATG 3 cut(s) 206, 253, 274
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 145, 557
Csp6I GTAC 2 cut(s) 178, 496
CspAI ACCGGT 1 cut(s) 794
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 4 cut(s) 357, 451, 623, 752
CviQI GTAC 2 cut(s) 178, 496
DdeI CTNAG 6 cut(s) 194, 235, 391, 455, 531, 819
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 776
EcoT38I GRGCYC 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 4 cut(s) 360, 454, 626, 755
FaiI YATR 9 cut(s) 358, 404, 452, 624, 630, 647, 685, 747, 753
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 356, 450, 622, 751
FblI GTMKAC 1 cut(s) 746
Fnu4HI GCNGC 2 cut(s) 375, 766
FokI GGATG 3 cut(s) 193, 260, 281
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 2 cut(s) 375, 766
GluI GCNGC 2 cut(s) 375, 766
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 3 cut(s) 146, 216, 650
HapII CCGG 2 cut(s) 710, 795
Hin1II CATG 4 cut(s) 360, 454, 626, 755
HindIII AAGCTT 3 cut(s) 388, 432, 482
HinfI GANTC 4 cut(s) 91, 308, 380, 815
HpaII CCGG 2 cut(s) 710, 795
Hpy166II GTNNAC 3 cut(s) 464, 616, 747
Hpy188I TCNGA 4 cut(s) 90, 131, 238, 820
Hpy188III TCNNGA 1 cut(s) 778
Hpy8I GTNNAC 3 cut(s) 464, 616, 747
HpyAV CCTTC 2 cut(s) 469, 749
HpyCH4III ACNGT 2 cut(s) 243, 568
HpyCH4V TGCA 3 cut(s) 638, 774, 855
HpyF10VI GCNNNNNNNGC 1 cut(s) 771
HpyF3I CTNAG 6 cut(s) 194, 235, 391, 455, 531, 819
Hsp92II CATG 4 cut(s) 360, 454, 626, 755
Kzo9I GATC 1 cut(s) 727
LmnI GCTCC 2 cut(s) 25, 665
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 2 cut(s) 215, 783
MaeIII GTNAC 1 cut(s) 848
MalI GATC 1 cut(s) 729
MboI GATC 1 cut(s) 727
MboII GAAGA 4 cut(s) 125, 374, 484, 680
MhlI GDGCHC 1 cut(s) 537
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 3 cut(s) 313, 722, 829
MluNI TGGCCA 1 cut(s) 216
MmeI TCCRAC 4 cut(s) 83, 225, 613, 643
MnlI CCTC 5 cut(s) 28, 158, 358, 779, 814
Mox20I TGGCCA 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 776
MscI TGGCCA 1 cut(s) 216
MseI TTAA 3 cut(s) 444, 696, 720
MslI CAYNNNNRTG 3 cut(s) 222, 623, 627
Msp20I TGGCCA 1 cut(s) 216
MspI CCGG 2 cut(s) 710, 795
MspR9I CCNGG 1 cut(s) 652
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 652
MwoI GCNNNNNNNGC 1 cut(s) 771
NdeII GATC 1 cut(s) 727
NlaIII CATG 4 cut(s) 360, 454, 626, 755
NlaIV GGNNCC 1 cut(s) 657
NsiI ATGCAT 1 cut(s) 776
NspI RCATGY 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 623
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 4 cut(s) 91, 308, 380, 815
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 2 cut(s) 376, 767
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 650
PspGI CCWGG 1 cut(s) 650
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 145, 557
PstNI CAGNNNCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 179, 497
RsaNI GTAC 2 cut(s) 178, 496
RseI CAYNNNNRTG 3 cut(s) 222, 623, 627
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 444, 696, 720
SatI GCNGC 2 cut(s) 375, 766
Sau3AI GATC 1 cut(s) 727
Sau96I GGNCC 2 cut(s) 145, 557
ScaI AGTACT 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 652
SduI GDGCHC 1 cut(s) 537
SfaNI GCATC 2 cut(s) 215, 783
SfcI CTRYAG 1 cut(s) 593
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 222, 623, 627
SmlI CTYRAG 2 cut(s) 201, 338
SmoI CTYRAG 2 cut(s) 201, 338
Sse9I AATT 3 cut(s) 313, 722, 829
SsiI CCGC 3 cut(s) 13, 32, 766
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 650
TaaI ACNGT 2 cut(s) 243, 568
TasI AATT 3 cut(s) 313, 722, 829
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 768
TfiI GAWTC 4 cut(s) 91, 308, 380, 815
Tru1I TTAA 3 cut(s) 444, 696, 720
Tru9I TTAA 3 cut(s) 444, 696, 720
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 264, 534, 680
TspGWI ACGGA 2 cut(s) 115, 320
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 1 cut(s) 722
XceI RCATGY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 746
ZrmI AGTACT 1 cut(s) 497
Zsp2I ATGCAT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.