HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47830 |
| fragaria_vesca | FvH4_5g16440 FvH4_5g16440 FvH4_5g16440 |
| malus_domestica | MD06G1180800.v1.1 |
| prunus_persica | Prupe.5G178800_v2.0.a1 |
| pyrus_communis | pycom06g15990 |
| rosa_chinensis | RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661 |
| rosa_laevigata | RLG00000005332 RLG00000018712 |
| rosa_multiflora | Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00121220 |
| rosa_rugosa | Rorug06G0427000 Rorug06G0427000 Rorug06G0427100 |
| rosa_samantha | Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400 |
| rosa_wichuraiana | Rw0G007640 Rw7G002140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 164 |
| AciI | CCGC | 1 cut(s) | 184 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AjnI | CCWGG | 1 cut(s) | 9 |
| AluBI | AGCT | 2 cut(s) | 17, 178 |
| AluI | AGCT | 2 cut(s) | 17, 178 |
| ApeKI | GCWGC | 2 cut(s) | 14, 220 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| BbvI | GCAGC | 2 cut(s) | 26, 232 |
| BciT130I | CCWGG | 1 cut(s) | 11 |
| BciVI | GTATCC | 1 cut(s) | 117 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfuI | GTATCC | 1 cut(s) | 117 |
| BisI | GCNGC | 3 cut(s) | 15, 184, 221 |
| BlsI | GCNGC | 3 cut(s) | 16, 185, 222 |
| Bme1390I | CCNGG | 1 cut(s) | 11 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmrFI | CCNGG | 1 cut(s) | 11 |
| BmsI | GCATC | 1 cut(s) | 201 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| BseBI | CCWGG | 1 cut(s) | 11 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BseXI | GCAGC | 2 cut(s) | 26, 232 |
| BspACI | CCGC | 1 cut(s) | 184 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssNAI | GTATAC | 1 cut(s) | 165 |
| Bst1107I | GTATAC | 1 cut(s) | 165 |
| Bst2UI | CCWGG | 1 cut(s) | 11 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 189 |
| BstNI | CCWGG | 1 cut(s) | 11 |
| BstSCI | CCNGG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 2 cut(s) | 26, 232 |
| BstZ17I | GTATAC | 1 cut(s) | 165 |
| BsuI | GTATCC | 1 cut(s) | 117 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CviAII | CATG | 2 cut(s) | 37, 170 |
| CviJI | RGCY | 5 cut(s) | 9, 17, 62, 68, 178 |
| CviKI_1 | RGCY | 5 cut(s) | 9, 17, 62, 68, 178 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| EcoRII | CCWGG | 1 cut(s) | 9 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| FaeI | CATG | 2 cut(s) | 40, 173 |
| FaiI | YATR | 5 cut(s) | 38, 65, 103, 165, 171 |
| FatI | CATG | 2 cut(s) | 36, 169 |
| FblI | GTMKAC | 1 cut(s) | 164 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 184, 221 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 184, 221 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GluI | GCNGC | 3 cut(s) | 15, 184, 221 |
| Hin1II | CATG | 2 cut(s) | 40, 173 |
| Hpy166II | GTNNAC | 1 cut(s) | 165 |
| Hpy188I | TCNGA | 1 cut(s) | 150 |
| Hpy188III | TCNNGA | 1 cut(s) | 196 |
| Hpy8I | GTNNAC | 1 cut(s) | 165 |
| HpyAV | CCTTC | 2 cut(s) | 34, 167 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 192 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 189 |
| Hsp92II | CATG | 2 cut(s) | 40, 173 |
| LmnI | GCTCC | 1 cut(s) | 83 |
| LpnPI | CCDG | 4 cut(s) | 23, 76, 90, 141 |
| Lsp1109I | GCAGC | 2 cut(s) | 26, 232 |
| LweI | GCATC | 1 cut(s) | 201 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MboII | GAAGA | 1 cut(s) | 98 |
| MluCI | AATT | 3 cut(s) | 140, 247, 265 |
| MmeI | TCCRAC | 1 cut(s) | 61 |
| MnlI | CCTC | 2 cut(s) | 197, 232 |
| MseI | TTAA | 3 cut(s) | 27, 114, 138 |
| MslI | CAYNNNNRTG | 1 cut(s) | 41 |
| MspR9I | CCNGG | 1 cut(s) | 11 |
| MvaI | CCWGG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 189 |
| NlaIII | CATG | 2 cut(s) | 40, 173 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| PkrI | GCNGC | 3 cut(s) | 16, 185, 222 |
| Psp6I | CCWGG | 1 cut(s) | 9 |
| PspGI | CCWGG | 1 cut(s) | 9 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| RseI | CAYNNNNRTG | 1 cut(s) | 41 |
| SaqAI | TTAA | 3 cut(s) | 27, 114, 138 |
| SatI | GCNGC | 3 cut(s) | 15, 184, 221 |
| ScrFI | CCNGG | 1 cut(s) | 11 |
| SetI | ASST | 5 cut(s) | 19, 23, 45, 180, 208 |
| SfaNI | GCATC | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 41 |
| Sse9I | AATT | 3 cut(s) | 140, 247, 265 |
| SsiI | CCGC | 1 cut(s) | 184 |
| SspMI | CTAG | 1 cut(s) | 18 |
| StyD4I | CCNGG | 1 cut(s) | 9 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TasI | AATT | 3 cut(s) | 140, 247, 265 |
| TauI | GCSGC | 1 cut(s) | 186 |
| Tru1I | TTAA | 3 cut(s) | 27, 114, 138 |
| Tru9I | TTAA | 3 cut(s) | 27, 114, 138 |
| TseI | GCWGC | 2 cut(s) | 14, 220 |
| TspDTI | ATGAA | 4 cut(s) | 53, 98, 147, 247 |
| XapI | RAATTY | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 164 |
| XspI | CTAG | 1 cut(s) | 18 |