HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47830 |
| fragaria_vesca | FvH4_5g16440 FvH4_5g16440 FvH4_5g16440 |
| malus_domestica | MD06G1180800.v1.1 |
| prunus_persica | Prupe.5G178800_v2.0.a1 |
| pyrus_communis | pycom06g15990 |
| rosa_chinensis | RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661 |
| rosa_laevigata | RLG00000005332 RLG00000018712 |
| rosa_multiflora | Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00121220 |
| rosa_rugosa | Rorug06G0427000 Rorug06G0427000 Rorug06G0427100 |
| rosa_samantha | Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400 |
| rosa_wichuraiana | Rw0G007640 Rw7G002140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 282 |
| AccI | GTMKAC | 1 cut(s) | 521 |
| AciI | CCGC | 1 cut(s) | 541 |
| AcsI | RAATTY | 1 cut(s) | 497 |
| AcuI | CTGAAG | 1 cut(s) | 353 |
| AflIII | ACRYGT | 1 cut(s) | 98 |
| AgsI | TTSAA | 3 cut(s) | 118, 140, 322 |
| AleI | CACNNNNGTG | 1 cut(s) | 398 |
| AluBI | AGCT | 7 cut(s) | 51, 165, 197, 209, 259, 310, 535 |
| AluI | AGCT | 7 cut(s) | 51, 165, 197, 209, 259, 310, 535 |
| Alw21I | GWGCWC | 1 cut(s) | 312 |
| ApeKI | GCWGC | 2 cut(s) | 149, 577 |
| ApoI | RAATTY | 1 cut(s) | 497 |
| AspS9I | GGNCC | 1 cut(s) | 332 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AvaII | GGWCC | 1 cut(s) | 332 |
| BanII | GRGCYC | 1 cut(s) | 312 |
| Bbv12I | GWGCWC | 1 cut(s) | 312 |
| BbvI | GCAGC | 2 cut(s) | 136, 589 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 619 |
| BciVI | GTATCC | 1 cut(s) | 474 |
| BfaI | CTAG | 1 cut(s) | 5 |
| BfuAI | ACCTGC | 1 cut(s) | 282 |
| BfuI | GTATCC | 1 cut(s) | 474 |
| BisI | GCNGC | 3 cut(s) | 150, 541, 578 |
| BlpI | GCTNAGC | 1 cut(s) | 306 |
| BlsI | GCNGC | 3 cut(s) | 151, 542, 579 |
| Bme18I | GGWCC | 1 cut(s) | 332 |
| BmgT120I | GGNCC | 1 cut(s) | 332 |
| BmiI | GGNNCC | 1 cut(s) | 432 |
| BmsI | GCATC | 2 cut(s) | 70, 558 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BpmI | CTGGAG | 1 cut(s) | 263 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 1 cut(s) | 66 |
| Bse1I | ACTGG | 2 cut(s) | 434, 574 |
| Bse3DI | GCAATG | 1 cut(s) | 637 |
| BseDI | CCNNGG | 1 cut(s) | 66 |
| BseMI | GCAATG | 1 cut(s) | 637 |
| BseMII | CTCAG | 2 cut(s) | 221, 297 |
| BseNI | ACTGG | 2 cut(s) | 434, 574 |
| BseXI | GCAGC | 2 cut(s) | 136, 589 |
| BsiHKAI | GWGCWC | 1 cut(s) | 312 |
| BsmI | GAATGC | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 1 cut(s) | 312 |
| Bsp143I | GATC | 1 cut(s) | 502 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 306 |
| BspACI | CCGC | 1 cut(s) | 541 |
| BspCNI | CTCAG | 2 cut(s) | 222, 298 |
| BspLI | GGNNCC | 1 cut(s) | 432 |
| BspMI | ACCTGC | 1 cut(s) | 282 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BsrDI | GCAATG | 1 cut(s) | 637 |
| BsrI | ACTGG | 2 cut(s) | 434, 574 |
| BssECI | CCNNGG | 1 cut(s) | 66 |
| BssMI | GATC | 1 cut(s) | 502 |
| BssNAI | GTATAC | 1 cut(s) | 522 |
| Bst1107I | GTATAC | 1 cut(s) | 522 |
| Bst4CI | ACNGT | 1 cut(s) | 343 |
| Bst6I | CTCTTC | 1 cut(s) | 28 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 4 cut(s) | 166, 198, 230, 306 |
| BstKTI | GATC | 1 cut(s) | 505 |
| BstMBI | GATC | 1 cut(s) | 502 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 546 |
| BstNSI | RCATGY | 2 cut(s) | 102, 229 |
| BstV1I | GCAGC | 2 cut(s) | 136, 589 |
| BstZ17I | GTATAC | 1 cut(s) | 522 |
| BsuI | GTATCC | 1 cut(s) | 474 |
| BtsIMutI | CAGTG | 1 cut(s) | 567 |
| BveI | ACCTGC | 1 cut(s) | 282 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 332 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 324, 359 |
| CviAII | CATG | 5 cut(s) | 99, 226, 398, 527, 616 |
| DdeI | CTNAG | 4 cut(s) | 166, 198, 230, 306 |
| DpnI | GATC | 1 cut(s) | 504 |
| DpnII | GATC | 1 cut(s) | 502 |
| Eam1104I | CTCTTC | 1 cut(s) | 28 |
| EarI | CTCTTC | 1 cut(s) | 28 |
| Ecl136II | GAGCTC | 1 cut(s) | 310 |
| Eco24I | GRGCYC | 1 cut(s) | 312 |
| Eco32I | GATATC | 1 cut(s) | 601 |
| Eco47I | GGWCC | 1 cut(s) | 332 |
| Eco53kI | GAGCTC | 1 cut(s) | 310 |
| Eco57I | CTGAAG | 1 cut(s) | 353 |
| EcoICRI | GAGCTC | 1 cut(s) | 310 |
| EcoRV | GATATC | 1 cut(s) | 601 |
| EcoT22I | ATGCAT | 1 cut(s) | 85 |
| EcoT38I | GRGCYC | 1 cut(s) | 312 |
| FaeI | CATG | 5 cut(s) | 102, 229, 401, 530, 619 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 248, 280 |
| FatI | CATG | 5 cut(s) | 98, 225, 397, 526, 615 |
| FblI | GTMKAC | 1 cut(s) | 521 |
| Fnu4HI | GCNGC | 3 cut(s) | 150, 541, 578 |
| FriOI | GRGCYC | 1 cut(s) | 312 |
| Fsp4HI | GCNGC | 3 cut(s) | 150, 541, 578 |
| FspBI | CTAG | 1 cut(s) | 5 |
| GluI | GCNGC | 3 cut(s) | 150, 541, 578 |
| GsuI | CTGGAG | 1 cut(s) | 263 |
| Hin1II | CATG | 5 cut(s) | 102, 229, 401, 530, 619 |
| HindIII | AAGCTT | 3 cut(s) | 163, 207, 257 |
| HinfI | GANTC | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 2 cut(s) | 391, 522 |
| Hpy188I | TCNGA | 1 cut(s) | 507 |
| Hpy188III | TCNNGA | 1 cut(s) | 553 |
| Hpy8I | GTNNAC | 2 cut(s) | 391, 522 |
| HpyAV | CCTTC | 2 cut(s) | 244, 524 |
| HpyCH4III | ACNGT | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 8 cut(s) | 24, 83, 216, 277, 413, 549, 623, 630 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 546 |
| HpyF3I | CTNAG | 4 cut(s) | 166, 198, 230, 306 |
| Hsp92II | CATG | 5 cut(s) | 102, 229, 401, 530, 619 |
| Kzo9I | GATC | 1 cut(s) | 502 |
| LmnI | GCTCC | 1 cut(s) | 440 |
| LpnPI | CCDG | 7 cut(s) | 227, 287, 399, 433, 447, 498, 555 |
| Lsp1109I | GCAGC | 2 cut(s) | 136, 589 |
| LweI | GCATC | 2 cut(s) | 70, 558 |
| MaeI | CTAG | 1 cut(s) | 5 |
| MalI | GATC | 1 cut(s) | 504 |
| MboI | GATC | 1 cut(s) | 502 |
| MboII | GAAGA | 3 cut(s) | 45, 259, 455 |
| MhlI | GDGCHC | 1 cut(s) | 312 |
| MluCI | AATT | 3 cut(s) | 297, 497, 604 |
| MmeI | TCCRAC | 3 cut(s) | 388, 418, 633 |
| MnlI | CCTC | 4 cut(s) | 29, 76, 554, 589 |
| Mph1103I | ATGCAT | 1 cut(s) | 85 |
| MseI | TTAA | 6 cut(s) | 54, 219, 300, 356, 471, 495 |
| MslI | CAYNNNNRTG | 1 cut(s) | 398 |
| Mva1269I | GAATGC | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 546 |
| NdeII | GATC | 1 cut(s) | 502 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 5 cut(s) | 102, 229, 401, 530, 619 |
| NlaIV | GGNNCC | 1 cut(s) | 432 |
| NsiI | ATGCAT | 1 cut(s) | 85 |
| NspI | RCATGY | 2 cut(s) | 102, 229 |
| OliI | CACNNNNGTG | 1 cut(s) | 398 |
| PciI | ACATGT | 1 cut(s) | 98 |
| PctI | GAATGC | 1 cut(s) | 26 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PkrI | GCNGC | 3 cut(s) | 151, 542, 579 |
| PscI | ACATGT | 1 cut(s) | 98 |
| Psp124BI | GAGCTC | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 1 cut(s) | 432 |
| PspPI | GGNCC | 1 cut(s) | 332 |
| RseI | CAYNNNNRTG | 1 cut(s) | 398 |
| SacI | GAGCTC | 1 cut(s) | 312 |
| SaqAI | TTAA | 6 cut(s) | 54, 219, 300, 356, 471, 495 |
| SatI | GCNGC | 3 cut(s) | 150, 541, 578 |
| Sau3AI | GATC | 1 cut(s) | 502 |
| Sau96I | GGNCC | 1 cut(s) | 332 |
| SduI | GDGCHC | 1 cut(s) | 312 |
| SfaNI | GCATC | 2 cut(s) | 70, 558 |
| SinI | GGWCC | 1 cut(s) | 332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 398 |
| Sse9I | AATT | 3 cut(s) | 297, 497, 604 |
| SsiI | CCGC | 1 cut(s) | 541 |
| SspI | AATATT | 2 cut(s) | 93, 114 |
| SspMI | CTAG | 1 cut(s) | 5 |
| SstI | GAGCTC | 1 cut(s) | 312 |
| TaaI | ACNGT | 1 cut(s) | 343 |
| TasI | AATT | 3 cut(s) | 297, 497, 604 |
| TauI | GCSGC | 1 cut(s) | 543 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 6 cut(s) | 54, 219, 300, 356, 471, 495 |
| Tru9I | TTAA | 6 cut(s) | 54, 219, 300, 356, 471, 495 |
| TscAI | CASTG | 1 cut(s) | 574 |
| TseI | GCWGC | 2 cut(s) | 149, 577 |
| TspDTI | ATGAA | 4 cut(s) | 309, 455, 504, 604 |
| TspRI | CASTG | 1 cut(s) | 574 |
| VpaK11BI | GGWCC | 1 cut(s) | 332 |
| XapI | RAATTY | 1 cut(s) | 497 |
| XceI | RCATGY | 2 cut(s) | 102, 229 |
| XmiI | GTMKAC | 1 cut(s) | 521 |
| XspI | CTAG | 1 cut(s) | 5 |
| Zsp2I | ATGCAT | 1 cut(s) | 85 |