HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47830 |
| fragaria_vesca | FvH4_5g16440 FvH4_5g16440 FvH4_5g16440 |
| malus_domestica | MD06G1180800.v1.1 |
| prunus_persica | Prupe.5G178800_v2.0.a1 |
| pyrus_communis | pycom06g15990 |
| rosa_chinensis | RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661 |
| rosa_laevigata | RLG00000005332 RLG00000018712 |
| rosa_multiflora | Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00121220 |
| rosa_rugosa | Rorug06G0427000 Rorug06G0427000 Rorug06G0427100 |
| rosa_samantha | Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400 |
| rosa_wichuraiana | Rw0G007640 Rw7G002140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 147 |
| AccI | GTMKAC | 1 cut(s) | 386 |
| AccIII | TCCGGA | 1 cut(s) | 513 |
| AciI | CCGC | 1 cut(s) | 406 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AcuI | CTGAAG | 1 cut(s) | 218 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 629 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AleI | CACNNNNGTG | 1 cut(s) | 263 |
| AluBI | AGCT | 9 cut(s) | 30, 62, 74, 124, 175, 400, 511, 614, 638 |
| AluI | AGCT | 9 cut(s) | 30, 62, 74, 124, 175, 400, 511, 614, 638 |
| Alw21I | GWGCWC | 1 cut(s) | 177 |
| Aor13HI | TCCGGA | 1 cut(s) | 513 |
| ApeKI | GCWGC | 3 cut(s) | 14, 442, 603 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| AspS9I | GGNCC | 1 cut(s) | 197 |
| AsuHPI | GGTGA | 1 cut(s) | 644 |
| AvaII | GGWCC | 1 cut(s) | 197 |
| BanII | GRGCYC | 1 cut(s) | 177 |
| Bbv12I | GWGCWC | 1 cut(s) | 177 |
| BbvI | GCAGC | 2 cut(s) | 454, 615 |
| BccI | CCATC | 1 cut(s) | 530 |
| BciVI | GTATCC | 1 cut(s) | 339 |
| BfuAI | ACCTGC | 1 cut(s) | 147 |
| BfuI | GTATCC | 1 cut(s) | 339 |
| BisI | GCNGC | 4 cut(s) | 15, 406, 443, 604 |
| BlpI | GCTNAGC | 1 cut(s) | 171 |
| BlsI | GCNGC | 4 cut(s) | 16, 407, 444, 605 |
| Bme18I | GGWCC | 1 cut(s) | 197 |
| BmgT120I | GGNCC | 1 cut(s) | 197 |
| BmiI | GGNNCC | 1 cut(s) | 297 |
| BmsI | GCATC | 2 cut(s) | 423, 581 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 1 cut(s) | 459 |
| BsaWI | WCCGGW | 2 cut(s) | 513, 528 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 629 |
| Bse1I | ACTGG | 2 cut(s) | 299, 439 |
| BseAI | TCCGGA | 1 cut(s) | 513 |
| BseDI | CCNNGG | 1 cut(s) | 459 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 629 |
| BseMII | CTCAG | 3 cut(s) | 86, 162, 606 |
| BseNI | ACTGG | 2 cut(s) | 299, 439 |
| BseXI | GCAGC | 2 cut(s) | 454, 615 |
| BsiHKAI | GWGCWC | 1 cut(s) | 177 |
| BsiSI | CCGG | 2 cut(s) | 514, 529 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 629 |
| Bsp1286I | GDGCHC | 1 cut(s) | 177 |
| Bsp13I | TCCGGA | 1 cut(s) | 513 |
| Bsp143I | GATC | 1 cut(s) | 367 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 171 |
| BspACI | CCGC | 1 cut(s) | 406 |
| BspCNI | CTCAG | 3 cut(s) | 87, 163, 607 |
| BspEI | TCCGGA | 1 cut(s) | 513 |
| BspLI | GGNNCC | 1 cut(s) | 297 |
| BspMI | ACCTGC | 1 cut(s) | 147 |
| BsrI | ACTGG | 2 cut(s) | 299, 439 |
| BssECI | CCNNGG | 1 cut(s) | 459 |
| BssMI | GATC | 1 cut(s) | 367 |
| BssNAI | GTATAC | 1 cut(s) | 387 |
| Bst1107I | GTATAC | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstDEI | CTNAG | 5 cut(s) | 31, 63, 95, 171, 615 |
| BstKTI | GATC | 1 cut(s) | 370 |
| BstMBI | GATC | 1 cut(s) | 367 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 411 |
| BstNSI | RCATGY | 1 cut(s) | 94 |
| BstV1I | GCAGC | 2 cut(s) | 454, 615 |
| BstZ17I | GTATAC | 1 cut(s) | 387 |
| BsuI | GTATCC | 1 cut(s) | 339 |
| BtgZI | GCGATG | 1 cut(s) | 549 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| BveI | ACCTGC | 1 cut(s) | 147 |
| Cfr13I | GGNCC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 189, 224 |
| CviAII | CATG | 3 cut(s) | 91, 263, 392 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 5 cut(s) | 31, 63, 95, 171, 615 |
| DpnI | GATC | 1 cut(s) | 369 |
| DpnII | GATC | 1 cut(s) | 367 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco24I | GRGCYC | 1 cut(s) | 177 |
| Eco32I | GATATC | 1 cut(s) | 466 |
| Eco47I | GGWCC | 1 cut(s) | 197 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 218 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoRV | GATATC | 1 cut(s) | 466 |
| EcoT38I | GRGCYC | 1 cut(s) | 177 |
| FaeI | CATG | 3 cut(s) | 94, 266, 395 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FatI | CATG | 3 cut(s) | 90, 262, 391 |
| FblI | GTMKAC | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 406, 443, 604 |
| FriOI | GRGCYC | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 406, 443, 604 |
| GluI | GCNGC | 4 cut(s) | 15, 406, 443, 604 |
| HapII | CCGG | 2 cut(s) | 514, 529 |
| Hin1II | CATG | 3 cut(s) | 94, 266, 395 |
| HindIII | AAGCTT | 3 cut(s) | 28, 72, 122 |
| HinfI | GANTC | 2 cut(s) | 20, 455 |
| HpaII | CCGG | 2 cut(s) | 514, 529 |
| HphI | GGTGA | 1 cut(s) | 644 |
| Hpy166II | GTNNAC | 2 cut(s) | 256, 387 |
| Hpy188I | TCNGA | 3 cut(s) | 372, 460, 544 |
| Hpy188III | TCNNGA | 2 cut(s) | 418, 514 |
| Hpy8I | GTNNAC | 2 cut(s) | 256, 387 |
| HpyAV | CCTTC | 2 cut(s) | 109, 389 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4IV | ACGT | 1 cut(s) | 487 |
| HpyCH4V | TGCA | 4 cut(s) | 278, 414, 572, 603 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 411 |
| HpyF3I | CTNAG | 5 cut(s) | 31, 63, 95, 171, 615 |
| HpySE526I | ACGT | 1 cut(s) | 487 |
| Hsp92II | CATG | 3 cut(s) | 94, 266, 395 |
| Kpn2I | TCCGGA | 1 cut(s) | 513 |
| Kzo9I | GATC | 1 cut(s) | 367 |
| LmnI | GCTCC | 4 cut(s) | 305, 516, 531, 595 |
| Lsp1109I | GCAGC | 2 cut(s) | 454, 615 |
| LweI | GCATC | 2 cut(s) | 423, 581 |
| MaeII | ACGT | 1 cut(s) | 487 |
| MaeIII | GTNAC | 2 cut(s) | 483, 488 |
| MalI | GATC | 1 cut(s) | 369 |
| MboI | GATC | 1 cut(s) | 367 |
| MboII | GAAGA | 2 cut(s) | 124, 320 |
| MhlI | GDGCHC | 1 cut(s) | 177 |
| MluCI | AATT | 4 cut(s) | 162, 362, 469, 500 |
| MmeI | TCCRAC | 3 cut(s) | 87, 253, 283 |
| MnlI | CCTC | 3 cut(s) | 419, 454, 633 |
| MroI | TCCGGA | 1 cut(s) | 513 |
| MseI | TTAA | 5 cut(s) | 84, 165, 221, 336, 360 |
| MslI | CAYNNNNRTG | 1 cut(s) | 263 |
| MspI | CCGG | 2 cut(s) | 514, 529 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 411 |
| NdeII | GATC | 1 cut(s) | 367 |
| NlaIII | CATG | 3 cut(s) | 94, 266, 395 |
| NlaIV | GGNNCC | 1 cut(s) | 297 |
| NspI | RCATGY | 1 cut(s) | 94 |
| OliI | CACNNNNGTG | 1 cut(s) | 263 |
| PfeI | GAWTC | 2 cut(s) | 20, 455 |
| PkrI | GCNGC | 4 cut(s) | 16, 407, 444, 605 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 297 |
| PspPI | GGNCC | 1 cut(s) | 197 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 263 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 5 cut(s) | 84, 165, 221, 336, 360 |
| SatI | GCNGC | 4 cut(s) | 15, 406, 443, 604 |
| Sau3AI | GATC | 1 cut(s) | 367 |
| Sau96I | GGNCC | 1 cut(s) | 197 |
| SduI | GDGCHC | 1 cut(s) | 177 |
| SfaNI | GCATC | 2 cut(s) | 423, 581 |
| SinI | GGWCC | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 263 |
| Sse9I | AATT | 4 cut(s) | 162, 362, 469, 500 |
| SsiI | CCGC | 1 cut(s) | 406 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaiI | ACGT | 1 cut(s) | 490 |
| TaqI | TCGA | 1 cut(s) | 522 |
| TasI | AATT | 4 cut(s) | 162, 362, 469, 500 |
| TauI | GCSGC | 1 cut(s) | 408 |
| TfiI | GAWTC | 2 cut(s) | 20, 455 |
| Tru1I | TTAA | 5 cut(s) | 84, 165, 221, 336, 360 |
| Tru9I | TTAA | 5 cut(s) | 84, 165, 221, 336, 360 |
| TscAI | CASTG | 1 cut(s) | 439 |
| TseI | GCWGC | 3 cut(s) | 14, 442, 603 |
| TspDTI | ATGAA | 6 cut(s) | 17, 174, 320, 369, 563, 593 |
| TspRI | CASTG | 1 cut(s) | 439 |
| VpaK11BI | GGWCC | 1 cut(s) | 197 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XceI | RCATGY | 1 cut(s) | 94 |
| XmiI | GTMKAC | 1 cut(s) | 386 |