Rh7BG025700
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003200
Physical Location & Seq
Reverse (-)
1823592 .. 1825458
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG025700.1

Sequence Viewer

Length: 672 bp
ATGCCGAAAAGCCGCAAAAGAAAGCAGCAGGACCACCACCCAAAACCTCCAACCAAAACACCCAAAACCACCAAAGAGACCCCAAAGGACCCATACCCGAATCACGCCCGACCCACCCGAGAAGAATGCGTGTCCGTCCGAGACGACCTCTTGGCCCTCCACGGCTTCCCCCAAGAGTTCGCCAAGTACCGAGAACAGCGACTGAGTTCTCAAACATCCAACGGCTGCGACGCTGCCGTCAGTTCAGAGCCGTCGGATGAAAAAGAGAGTGTCTTGGATGGTTTAGTGAGAACTCTATTGTCTCAGAATACCACGGAAGCTAATTCCCAGAAAGCCTTTGCTTCTCTCAAGTCAGCTTTTCCAACTTGGGAAGAGGTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCGAGATTTGTCAGTTGATGAAATTAAGTCTGAGCTCTCTCATTTTAAAGGAATAGGTCCAAAAACGGTAAATCTTTTGGTAGTGATGTTGAGCTGCTTTGCTTGGGTTGAGATGTTATATATGGTACTCTGGCTTATATATTTCGCTGTGTGTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

223

Amino Acids

25.07

Weight (kDa)

8.36

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 96 - 154 2.4e-08 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 516
AciI CCGC 1 cut(s) 13
AfaI GTAC 3 cut(s) 188, 506, 636
AluBI AGCT 8 cut(s) 320, 356, 399, 431, 443, 493, 544, 603
AluI AGCT 8 cut(s) 320, 356, 399, 431, 443, 493, 544, 603
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 3 cut(s) 71, 135, 306
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 5 cut(s) 25, 225, 233, 383, 603
AspS9I GGNCC 4 cut(s) 31, 88, 154, 566
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 3 cut(s) 31, 88, 566
BanII GRGCYC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 5 cut(s) 37, 212, 220, 370, 590
BccI CCATC 1 cut(s) 272
BceAI ACGGC 4 cut(s) 178, 221, 235, 238
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BcoDI GTCTC 3 cut(s) 71, 135, 306
BfuAI ACCTGC 1 cut(s) 516
BisI GCNGC 6 cut(s) 13, 26, 226, 234, 384, 604
BlsI GCNGC 6 cut(s) 14, 27, 227, 235, 385, 605
Bme18I GGWCC 3 cut(s) 31, 88, 566
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 4 cut(s) 31, 88, 154, 566
BmiI GGNNCC 1 cut(s) 90
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 160, 312
BseDI CCNNGG 2 cut(s) 160, 312
BseGI GGATG 3 cut(s) 215, 262, 283
BseMII CTCAG 4 cut(s) 194, 317, 455, 531
BseXI GCAGC 5 cut(s) 37, 212, 220, 370, 590
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 117
BsmAI GTCTC 3 cut(s) 71, 135, 306
BsmBI CGTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 546
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 4 cut(s) 195, 316, 456, 532
BspLI GGNNCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 160, 312
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 1 cut(s) 366
BstDEI CTNAG 6 cut(s) 203, 303, 400, 432, 464, 540
BstDSI CCRYGG 2 cut(s) 160, 312
BstF5I GGATG 3 cut(s) 215, 262, 283
BstMAI GTCTC 3 cut(s) 71, 135, 306
BstNSI RCATGY 1 cut(s) 463
BstV1I GCAGC 5 cut(s) 37, 212, 220, 370, 590
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 2 cut(s) 160, 312
BtsCI GGATG 3 cut(s) 215, 262, 283
BveI ACCTGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 4 cut(s) 31, 88, 154, 566
CseI GACGC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 187, 505, 635
CviAII CATG 1 cut(s) 460
CviQI GTAC 3 cut(s) 187, 505, 635
DdeI CTNAG 6 cut(s) 203, 303, 400, 432, 464, 540
DraI TTTAAA 1 cut(s) 556
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 3 cut(s) 31, 88, 566
Eco53kI GAGCTC 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 463
FaiI YATR 8 cut(s) 94, 413, 461, 628, 630, 632, 647, 649
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 6 cut(s) 13, 26, 226, 234, 384, 604
FokI GGATG 3 cut(s) 202, 269, 290
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 6 cut(s) 13, 26, 226, 234, 384, 604
GluI GCNGC 6 cut(s) 13, 26, 226, 234, 384, 604
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 463
HindIII AAGCTT 3 cut(s) 397, 441, 491
HinfI GANTC 2 cut(s) 100, 389
Hpy188I TCNGA 5 cut(s) 140, 247, 256, 306, 541
Hpy99I CGWCG 2 cut(s) 233, 256
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 1 cut(s) 577
HpyF3I CTNAG 6 cut(s) 203, 303, 400, 432, 464, 540
Hsp92II CATG 1 cut(s) 463
LpnPI CCDG 5 cut(s) 14, 341, 461, 521, 625
Lsp1109I GCAGC 5 cut(s) 37, 212, 220, 370, 590
MboII GAAGA 3 cut(s) 134, 383, 493
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 2 cut(s) 322, 531
MmeI TCCRAC 4 cut(s) 74, 234, 243, 386
MnlI CCTC 4 cut(s) 57, 158, 167, 367
MseI TTAA 3 cut(s) 453, 534, 555
Mva1269I GAATGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 463
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 100, 389
PkrI GCNGC 6 cut(s) 14, 27, 227, 235, 385, 605
PpuMI RGGWCCY 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 4 cut(s) 31, 88, 154, 566
PspPPI RGGWCCY 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 3 cut(s) 188, 506, 636
RsaNI GTAC 3 cut(s) 187, 505, 635
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 3 cut(s) 453, 534, 555
SatI GCNGC 6 cut(s) 13, 26, 226, 234, 384, 604
Sau96I GGNCC 4 cut(s) 31, 88, 154, 566
SduI GDGCHC 1 cut(s) 546
SinI GGWCC 3 cut(s) 31, 88, 566
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 322, 531
SsiI CCGC 1 cut(s) 13
SstI GAGCTC 1 cut(s) 546
TaaI ACNGT 1 cut(s) 577
TasI AATT 2 cut(s) 322, 531
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 100, 389
Tru1I TTAA 3 cut(s) 453, 534, 555
Tru9I TTAA 3 cut(s) 453, 534, 555
TseI GCWGC 5 cut(s) 25, 225, 233, 383, 603
TspDTI ATGAA 2 cut(s) 273, 543
TspGWI ACGGA 2 cut(s) 124, 329
VpaK11BI GGWCC 3 cut(s) 31, 88, 566
XceI RCATGY 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.