Rmu_sc0003401.1_g000007
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003401.1
OG0003200
Physical Location & Seq
Reverse (-)
17471 .. 17829
359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003401.1_g000007.1.cds

Sequence Viewer

Length: 279 bp
atgttccaacttcagcaagatgattttcctgtggacacccatgtgtttgagattgcaaaggctatggcttgggttccagttggatcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttttgtatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcaacaagaaaaggaatccgaggatatcaattcctgtcctttgttatgttactgtaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

92

Amino Acids

10.65

Weight (kDa)

6.8

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AlwI GGATC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 140
BciVI GTATCC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 77, 217
BseDI CCNNGG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 77, 217
Bsp143I GATC 2 cut(s) 83, 145
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 2 cut(s) 77, 217
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 83, 145
BssNAI GTATAC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 272
BstKTI GATC 2 cut(s) 86, 148
BstMBI GATC 2 cut(s) 83, 145
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstZ17I GTATAC 1 cut(s) 165
BsuI GTATCC 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 210
CviAII CATG 2 cut(s) 41, 170
CviJI RGCY 3 cut(s) 62, 68, 178
CviKI_1 RGCY 3 cut(s) 62, 68, 178
DpnI GATC 2 cut(s) 85, 147
DpnII GATC 2 cut(s) 83, 145
Eco32I GATATC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 244
FaeI CATG 2 cut(s) 44, 173
FaiI YATR 6 cut(s) 42, 65, 103, 165, 171, 265
FatI CATG 2 cut(s) 40, 169
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 184
Hin1II CATG 2 cut(s) 44, 173
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 34, 165
Hpy188I TCNGA 3 cut(s) 88, 150, 238
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 2 cut(s) 34, 165
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 56, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 44, 173
Kzo9I GATC 2 cut(s) 83, 145
LpnPI CCDG 6 cut(s) 42, 76, 90, 141, 198, 265
LweI GCATC 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 85, 147
MboI GATC 2 cut(s) 83, 145
MboII GAAGA 1 cut(s) 98
MluCI AATT 2 cut(s) 140, 247
MmeI TCCRAC 2 cut(s) 31, 61
MnlI CCTC 2 cut(s) 197, 232
MseI TTAA 2 cut(s) 114, 138
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 2 cut(s) 83, 145
NlaIII CATG 2 cut(s) 44, 173
NlaIV GGNNCC 1 cut(s) 75
OliI CACNNNNGTG 1 cut(s) 41
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 114, 138
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 83, 145
SetI ASST 2 cut(s) 180, 208
SfaNI GCATC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 2 cut(s) 140, 247
SsiI CCGC 1 cut(s) 184
TaaI ACNGT 1 cut(s) 272
TasI AATT 2 cut(s) 140, 247
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 114, 138
Tru9I TTAA 2 cut(s) 114, 138
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 98, 147
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.