pycom06g15990
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
20454406 .. 20462572
8167 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15990.6

Sequence Viewer

Length: 1014 bp
ATGGTTGGTTCATGTGTGGCGCCCAATTCATTAAATACCGATCGGGGCCACAGACAAATCCAACGGGCCCATAAACGCCTATCACCATCTCTCTCACAACAAGAACAGAGCTTCTACAACAACAAAAAAATGCCGAAGACTCGCAAAAGAAAGCAGGTGGAGGCTGAGCAGAAGCCAAAATCCGCAACCAAATCAGCCAAAACCGCCAATCCCTTCAAAGCGACGGCAAAGGACCCGTACCCGAATCACCCCCGACCCACCCGAGAAGAATGCTTGTCCGTACGCGACGACCTCTTGGCCTTCCACGGCTTCCCGGAAGAATTCGCCGAGTACAGAAAGCAGAGACTGATGGCTCTTGAAACCGACGGCGCCATGAATTCAGAGCCGTTAGATCGGAAAGAGAGTGTTTTGGATGGGTTGGTGAGGACTCTGCTGTCGCAGAACACCACGGAAGTCAATTCCCAAAAGGCTTTTGCTTCTCTCAAATCAGCTTTTCCGACTTGGGAAGATGTTCTTGGTGCTGATTCAAATTCCATAGAGAATGCCATACGATGTGGAGGCCTAGCCAGGACTAAAACGTCGTGTATTAAGAACATGTTGAGGTGTTTACTGGAGAAGAAAGAAAAGTTGTGCTTGGAGTACTTGAGAGAGTTGTCAGTTGACGAAATTAAGTGCGAGCTATCTTGTTTCAAGGGAATCGGTCCCAAGACGGTGGCTTGTGTTTTGATGTTCCAGCTTCAGCAAGACGATTTTCCGGTGGACACGCATGTGTTCGAGATTGCAAAGGCTATTGGTTGGGTGCCAGCTGAAGCGGACAGGAATAAGACGTATCTTCATCTCAACCAATGGATCCCGAATGAACTCAAATTTGACCTCAACTGCCTTCTGTATACTCACGGCAAGCTCTGCCGCAAATGCATCAAGAAAGGGGATAGCCAGCAAGGTTTTATCACGCATATGGCAACTACATGGTCCATGCATTTCGGGTTAGTTTTTGTTCATTATTTCTTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

38.39

Weight (kDa)

9.04

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
AasI GACNNNNNNGTC 2 cut(s) 433, 577
Acc36I ACCTGC 1 cut(s) 145
AccB1I GGYRCC 3 cut(s) 19, 368, 799
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 285
AciI CCGC 4 cut(s) 183, 204, 812, 910
AclWI GGATC 2 cut(s) 844, 857
AcsI RAATTY 4 cut(s) 320, 376, 529, 866
AcuI CTGAAG 2 cut(s) 722, 828
AcyI GRCGYC 2 cut(s) 20, 369
AfaI GTAC 4 cut(s) 239, 282, 332, 641
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 4 cut(s) 217, 359, 528, 691
AjnI CCWGG 1 cut(s) 566
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 6 cut(s) 111, 491, 679, 736, 806, 904
AluI AGCT 6 cut(s) 111, 491, 679, 736, 806, 904
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 2 cut(s) 844, 857
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 4 cut(s) 46, 66, 297, 559
ApaI GGGCCC 1 cut(s) 70
ApoI RAATTY 4 cut(s) 320, 376, 529, 866
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 2 cut(s) 22, 371
AspS9I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 75, 239, 433
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 3 cut(s) 232, 701, 972
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 849
BanI GGYRCC 3 cut(s) 19, 368, 799
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 143
BccI CCATC 3 cut(s) 94, 343, 407
BceAI ACGGC 5 cut(s) 240, 322, 370, 382, 913
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciT130I CCWGG 1 cut(s) 568
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 563
BfoI RGCGCY 2 cut(s) 23, 372
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 910
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 911
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 2 cut(s) 314, 568
Bme18I GGWCC 3 cut(s) 232, 701, 972
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
BmiI GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
BmrFI CCNGG 2 cut(s) 314, 568
BmsI GCATC 1 cut(s) 927
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 632
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 314
BsaHI GRCGYC 2 cut(s) 20, 369
BsaJI CCNNGG 2 cut(s) 304, 447
BsaWI WCCGGW 1 cut(s) 754
Bse1I ACTGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 2 cut(s) 304, 447
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 615
BseSI GKGCMC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 48, 68, 299, 561
BshNI GGYRCC 3 cut(s) 19, 368, 799
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 314, 755
BsiWI CGTACG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 687
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 2 cut(s) 275, 547
BsnI GGCC 4 cut(s) 48, 68, 299, 561
BsoBI CYCGRG 1 cut(s) 261
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 40, 391, 849
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 4 cut(s) 183, 204, 812, 910
BspANI GGCC 4 cut(s) 48, 68, 299, 561
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 844, 857
BspT107I GGYRCC 3 cut(s) 19, 368, 799
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 2 cut(s) 304, 447
BssMI GATC 3 cut(s) 40, 391, 849
BssNAI GTATAC 1 cut(s) 891
BssNI GRCGYC 2 cut(s) 20, 369
Bst1107I GTATAC 1 cut(s) 891
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 1 cut(s) 712
BstACI GRCGYC 2 cut(s) 20, 369
BstAPI GCANNNNNTGC 1 cut(s) 906
BstC8I GCNNGC 4 cut(s) 677, 804, 902, 938
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 2 cut(s) 304, 447
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 2 cut(s) 23, 372
BstHHI GCGC 2 cut(s) 22, 371
BstKTI GATC 3 cut(s) 43, 394, 852
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 3 cut(s) 40, 391, 849
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 203, 906, 915
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 2 cut(s) 598, 770
BstSCI CCNGG 2 cut(s) 312, 566
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 849
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 849
BstZ17I GTATAC 1 cut(s) 891
BsuRI GGCC 4 cut(s) 48, 68, 299, 561
BtgI CCRYGG 2 cut(s) 304, 447
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 677, 804, 902, 938
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 2 cut(s) 22, 371
Cfr13I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
Csp6I GTAC 4 cut(s) 238, 281, 331, 640
CviAII CATG 6 cut(s) 12, 373, 595, 767, 969, 976
CviQI GTAC 4 cut(s) 238, 281, 331, 640
DdeI CTNAG 1 cut(s) 165
DinI GGCGCC 2 cut(s) 21, 370
DpnI GATC 3 cut(s) 42, 393, 851
DpnII GATC 3 cut(s) 40, 391, 849
DrdI GACNNNNNNGTC 2 cut(s) 433, 577
DseDI GACNNNNNNGTC 2 cut(s) 433, 577
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 232, 701, 972
Eco57I CTGAAG 2 cut(s) 722, 828
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 232
EcoRI GAATTC 2 cut(s) 320, 376
EcoRII CCWGG 1 cut(s) 566
EcoT22I ATGCAT 2 cut(s) 920, 981
EcoT38I GRGCYC 1 cut(s) 70
EgeI GGCGCC 2 cut(s) 21, 370
EheI GGCGCC 2 cut(s) 21, 370
FaeI CATG 6 cut(s) 15, 376, 598, 770, 972, 979
FalI AAGNNNNNCTT 4 cut(s) 498, 530, 617, 649
FaqI GGGAC 1 cut(s) 687
FatI CATG 6 cut(s) 11, 372, 594, 766, 968, 975
FauNDI CATATG 1 cut(s) 957
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 1 cut(s) 910
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 910
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 21, 370
GluI GCNGC 1 cut(s) 910
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 2 cut(s) 23, 372
HaeIII GGCC 4 cut(s) 48, 68, 299, 561
HapII CCGG 2 cut(s) 314, 755
HhaI GCGC 2 cut(s) 22, 371
Hin1I GRCGYC 2 cut(s) 20, 369
Hin1II CATG 6 cut(s) 15, 376, 598, 770, 972, 979
Hin6I GCGC 2 cut(s) 20, 369
HinP1I GCGC 2 cut(s) 20, 369
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 5 cut(s) 139, 244, 427, 524, 696
HpaII CCGG 2 cut(s) 314, 755
HphI GGTGA 3 cut(s) 75, 239, 433
Hpy166II GTNNAC 4 cut(s) 608, 661, 760, 891
Hpy188I TCNGA 3 cut(s) 382, 396, 498
Hpy188III TCNNGA 4 cut(s) 356, 775, 853, 922
Hpy8I GTNNAC 4 cut(s) 608, 661, 760, 891
Hpy99I CGWCG 4 cut(s) 226, 290, 368, 583
HpyAV CCTTC 3 cut(s) 223, 310, 893
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 2 cut(s) 578, 827
HpyCH4V TGCA 3 cut(s) 782, 918, 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 906, 915
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 578, 827
Hsp92I GRCGYC 2 cut(s) 20, 369
Hsp92II CATG 6 cut(s) 15, 376, 598, 770, 972, 979
HspAI GCGC 2 cut(s) 20, 369
KasI GGCGCC 2 cut(s) 19, 368
Kzo9I GATC 3 cut(s) 40, 391, 849
LweI GCATC 1 cut(s) 927
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 578, 827
MalI GATC 3 cut(s) 42, 393, 851
MboI GATC 3 cut(s) 40, 391, 849
MboII GAAGA 6 cut(s) 148, 278, 329, 518, 628, 824
MflI RGATCY 1 cut(s) 849
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 7 cut(s) 25, 320, 376, 457, 529, 666, 866
Mly113I GGCGCC 2 cut(s) 20, 369
MlyI GAGTC 2 cut(s) 133, 421
MmeI TCCRAC 2 cut(s) 85, 521
MnlI CCTC 6 cut(s) 154, 302, 417, 551, 594, 884
Mph1103I ATGCAT 2 cut(s) 920, 981
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 3 cut(s) 32, 588, 669
MslI CAYNNNNRTG 2 cut(s) 767, 956
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 2 cut(s) 314, 755
MspR9I CCNGG 2 cut(s) 314, 568
Mva1269I GAATGC 2 cut(s) 275, 547
MvaI CCWGG 1 cut(s) 568
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 3 cut(s) 203, 906, 915
NarI GGCGCC 2 cut(s) 20, 369
NciI CCSGG 1 cut(s) 314
NdeI CATATG 1 cut(s) 957
NdeII GATC 3 cut(s) 40, 391, 849
NlaIII CATG 6 cut(s) 15, 376, 598, 770, 972, 979
NlaIV GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
NmeAIII GCCGAG 1 cut(s) 352
NsiI ATGCAT 2 cut(s) 920, 981
NspI RCATGY 2 cut(s) 598, 770
OliI CACNNNNGTG 1 cut(s) 767
PaqCI CACCTGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 561
PciI ACATGT 1 cut(s) 594
PctI GAATGC 2 cut(s) 275, 547
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 3 cut(s) 244, 524, 696
Pfl23II CGTACG 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 1 cut(s) 911
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 133, 421
PluTI GGCGCC 2 cut(s) 23, 372
PpsI GAGTC 2 cut(s) 133, 421
PpuMI RGGWCCY 1 cut(s) 232
PscI ACATGT 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspLI CGTACG 1 cut(s) 280
PspN4I GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 849
PvuI CGATCG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 4 cut(s) 239, 282, 332, 641
RsaNI GTAC 4 cut(s) 238, 281, 331, 640
RseI CAYNNNNRTG 2 cut(s) 767, 956
SaqAI TTAA 3 cut(s) 32, 588, 669
SatI GCNGC 1 cut(s) 910
Sau3AI GATC 3 cut(s) 40, 391, 849
Sau96I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 2 cut(s) 133, 421
ScrFI CCNGG 2 cut(s) 314, 568
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 1 cut(s) 927
SfoI GGCGCC 2 cut(s) 21, 370
SinI GGWCC 3 cut(s) 232, 701, 972
SmiMI CAYNNNNRTG 2 cut(s) 767, 956
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 7 cut(s) 25, 320, 376, 457, 529, 666, 866
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 4 cut(s) 183, 204, 812, 910
SspDI GGCGCC 2 cut(s) 19, 368
SspMI CTAG 1 cut(s) 563
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 312, 566
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 2 cut(s) 581, 830
TaqI TCGA 1 cut(s) 774
TaqII GACCGA 1 cut(s) 689
TasI AATT 7 cut(s) 25, 320, 376, 457, 529, 666, 866
TatI WGTACW 2 cut(s) 330, 639
TauI GCSGC 1 cut(s) 912
TfiI GAWTC 3 cut(s) 244, 524, 696
Tru1I TTAA 3 cut(s) 32, 588, 669
Tru9I TTAA 3 cut(s) 32, 588, 669
TspDTI ATGAA 5 cut(s) 18, 389, 824, 873, 989
TspGWI ACGGA 2 cut(s) 268, 464
VpaK11BI GGWCC 3 cut(s) 232, 701, 972
XapI RAATTY 4 cut(s) 320, 376, 529, 866
XceI RCATGY 2 cut(s) 598, 770
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 641
Zsp2I ATGCAT 2 cut(s) 920, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.