Rorug06G0427000
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003200
Physical Location & Seq
Forward (+)
56390411 .. 56399024
8614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0427000.1

Sequence Viewer

Length: 3120 bp
ATGGGAGTTCCAGCTTTCTACAGATGGCTAGCGGAGAAGTATCCACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCAGTTGTAATCGACGACGTTTCGATTCCGGTCGACACCAGTAAGCCAAACCCTAACGGCGAGTATGACAATCTGTACCTCGACATGAATGGGATTATTCACCCCTGTTTTCACCCTGAGGATAGGCCTTCACCAACTACCTTTGATGAGGTATTTCAGTGCATGTTTGACTACATAGATAGGCTTTTTGTGATGGTGCGGCCTCGGAAGCTACTGTACATGGCAATTGATGGTGTTGCCCCTAGGGCGAAAATGAATCAACAGAGATCCCGGCGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTGCGTGAGGAGTTTGAAATGGAGGGAAGAAAGCTTCCACCTAAACTGCATTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGCTGTTTTGTCAATTGCATTGCAGTACTATATTCATCTTAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTCATTCTTTCCGATGCAAATGTTCCGGGTGAAGGGGAGCACAAGGTTATGTCATACATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCCATTCTTCGAGAGGTTGTTTTCGTCGCTGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCCAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCCGAGGCTGTGGCCAAGAAGCCGTACCAGTTTCTCAATATTTGGACCCTTAGAGAATATTTGGAATATGAGATGCGGATTCCAGGTGCCCCATTTGAGATTGATATTGAGCGCATTGTGGATGACTTTATATTCCTTTGTTTCTTTGTCGGAAATGATTTCTTACCTCATATGCCTACACTGGAGATTCGGGAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTGGATCTGGTAGAGGAAATCCTCAAAAGGTTGCACGCTTGTCCAAAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGTTAAATTGGGTGAACCTGGATGGAGAGAGAGGTATTATGAAGAGAAGTTTAATGCAAAAACTCCCGAAGAACGTGAAGCAATTCGAAGAGATGTTGTTTTGCGTTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCTTACCATTATGCGCCCTTTGCTTCTGATCTCAAGGACCTCGGTCAACTAGATATAAGTTTTGAATTGGGCAGTCCCTTTAAACCGTTCAATCAGCTGTTAGGGGTTTTTCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCATACAGGAAGCTGATGACTGATCCAAACTCACCTCTTATTGATTTTTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGATTTGCATGGCAGGGTATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTTCTGAGGTTGAAAAACTTGAACATACATTAACGGAGGAGGAATCACGCAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAACAATTGACAGACAAAGAGCGTGTTGAGTTTAAGGAACAAATTGATCCCAAATACAGGGATACATGCAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGTGAGCCTTGTCCTCCCGTTTTCCGATCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATATGCGCAATATACAGACTACCAGATGTACATGAGCATATAACTCGACCACCAGCAGGGGTCATTTTCCCTAAGAAGATTGTGTCATCGGGGGACATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCGGGGAGGAGGCCATATGAAAGTTCTAGGCAGCACCCTCCTGGAGCCATTTCTGGAAGACAGCTTGGCGATGCCGCTCATCGACTTGTTGTTAATAGCTTACATGTTAAGGCAAACAGCAATGGGTATGGCAATCAGATGCCTGCCCATCAACCATATGCCGAACCTCCATATTACCCACCACGCGCTTCCTACGCAAGTAATGGAAGCTATGATCAGGGACACCACAGTATGGCACCACCTAGAACATTCCAGCATCCTCAAGTGCAACACCAAAATACCTACCACCCTCCGAATAGACCTCATTCTCAGCATTATGAAAGAAATTCTGGTCACTCATACTATCAGTCGGCCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCCTATCCAGTTGGTTATAACAACTATCAGAGTTTAGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGATCCACCGCCCCAGAATATGGGCAGAGGATATGGTCGTCCTCAGCAATCTGGAAACCCATACTCTGGATTGGACAGAAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

1039

Amino Acids

118.26

Weight (kDa)

6.51

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XRN_N PF03159 1 - 252 7.6e-102 XRN 5'-3' exonuclease N-terminus
XRN_M PF17846 326 - 815 1.1e-164 Xrn1 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2946
AasI GACNNNNNNGTC 1 cut(s) 2342
Acc16I TGCGCA 1 cut(s) 2353
AccB1I GGYRCC 2 cut(s) 962, 2737
AccB7I CCANNNNNTGG 4 cut(s) 2276, 2734, 3016, 3062
AccBSI CCGCTC 1 cut(s) 2579
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 2688
AclWI GGATC 8 cut(s) 336, 545, 656, 1399, 1916, 2213, 2993, 3006
AcoI YGGCCR 3 cut(s) 720, 888, 3109
AcsI RAATTY 3 cut(s) 1109, 1153, 2827
AcuI CTGAAG 5 cut(s) 408, 1256, 1341, 1593, 1716
AfaI GTAC 5 cut(s) 152, 293, 524, 902, 2376
AfiI CCNNNNNNNGG 8 cut(s) 605, 1897, 2229, 2276, 2402, 2734, 3016, 3062
AflIII ACRYGT 2 cut(s) 671, 2605
AjiI CACGTC 1 cut(s) 674
Alw21I GWGCWC 2 cut(s) 615, 1225
Alw26I GTCTC 2 cut(s) 2884, 3082
AlwI GGATC 8 cut(s) 336, 545, 656, 1399, 1916, 2213, 2993, 3006
AoxI GGCC 8 cut(s) 200, 275, 720, 888, 2513, 2853, 2966, 3109
ApeKI GCWGC 8 cut(s) 359, 371, 383, 400, 818, 1454, 1874, 2533
ApoI RAATTY 3 cut(s) 1109, 1153, 2827
Asp700I GAANNNNTTC 2 cut(s) 1488, 1665
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 4 cut(s) 990, 1774, 2354, 2690
AspS9I GGNCC 6 cut(s) 921, 1361, 1795, 2854, 2927, 2966
AsuC2I CCSGG 2 cut(s) 346, 600
AsuII TTCGAA 1 cut(s) 1669
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 4 cut(s) 921, 1361, 1795, 2927
AvrII CCTAGG 1 cut(s) 317
AxyI CCTNAGG 2 cut(s) 192, 1896
BaeGI GKGCMC 2 cut(s) 967, 1885
BalI TGGCCA 2 cut(s) 722, 890
BamHI GGATCC 1 cut(s) 2998
BanI GGYRCC 2 cut(s) 962, 2737
BanII GRGCYC 2 cut(s) 1225, 1299
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 4 cut(s) 629, 1584, 2027, 2566
Bbv12I GWGCWC 2 cut(s) 615, 1225
BbvCI CCTCAGC 1 cut(s) 3039
BbvI GCAGC 8 cut(s) 346, 383, 387, 395, 805, 1441, 1861, 2545
BccI CCATC 7 cut(s) 18, 262, 299, 552, 1599, 2658, 3106
BceAI ACGGC 4 cut(s) 148, 883, 1360, 2272
BcgI CGANNNNNNTGC 2 cut(s) 2372, 2406
BciVI GTATCC 2 cut(s) 51, 2227
BclI TGATCA 1 cut(s) 2716
BcnI CCSGG 2 cut(s) 346, 600
BcoDI GTCTC 2 cut(s) 2884, 3082
BfaI CTAG 5 cut(s) 29, 318, 1808, 2529, 2745
BfmI CTRYAG 1 cut(s) 19
BfuI GTATCC 2 cut(s) 51, 2227
BglI GCCNNNNNGGC 1 cut(s) 320
BlnI CCTAGG 1 cut(s) 317
BmcAI AGTACT 1 cut(s) 524
Bme18I GGWCC 4 cut(s) 921, 1361, 1795, 2927
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 6 cut(s) 921, 1361, 1795, 2854, 2927, 2966
BmiI GGNNCC 6 cut(s) 923, 964, 2548, 2739, 2929, 3000
BmtI GCTAGC 1 cut(s) 32
BoxI GACNNNNGTC 1 cut(s) 1800
BpiI GAAGAC 4 cut(s) 629, 1584, 2027, 2566
BplI GAGNNNNNCTC 2 cut(s) 3079, 3111
BpmI CTGGAG 3 cut(s) 873, 1079, 2565
Bpu10I CCTNAGC 1 cut(s) 3039
Bpu14I TTCGAA 1 cut(s) 1669
BpuEI CTTGAG 3 cut(s) 1508, 1775, 2748
BpuMI CCSGG 2 cut(s) 346, 600
BsaI GGTCTC 2 cut(s) 2884, 3082
BsaJI CCNNGG 8 cut(s) 278, 317, 717, 879, 1798, 2489, 2912, 2994
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 2890, 2920
Bsc4I CCNNNNNNNGG 8 cut(s) 605, 1897, 2229, 2276, 2402, 2734, 3016, 3062
Bse1I ACTGG 6 cut(s) 77, 114, 822, 904, 1062, 2936
Bse21I CCTNAGG 2 cut(s) 192, 1896
Bse3DI GCAATG 3 cut(s) 515, 676, 2629
BseDI CCNNGG 8 cut(s) 278, 317, 717, 879, 1798, 2489, 2912, 2994
BseGI GGATG 8 cut(s) 563, 700, 1003, 1610, 2131, 2256, 2758, 3098
BseLI CCNNNNNNNGG 8 cut(s) 605, 1897, 2229, 2276, 2402, 2734, 3016, 3062
BseMI GCAATG 3 cut(s) 515, 676, 2629
BseMII CTCAG 6 cut(s) 183, 1461, 1887, 2034, 2825, 3053
BseNI ACTGG 6 cut(s) 77, 114, 822, 904, 1062, 2936
BseRI GAGGAG 4 cut(s) 422, 1296, 2090, 2524
BseSI GKGCMC 2 cut(s) 967, 1885
BseXI GCAGC 8 cut(s) 346, 383, 387, 395, 805, 1441, 1861, 2545
BseYI CCCAGC 1 cut(s) 3102
BsgI GTGCAG 1 cut(s) 2436
Bsh1236I CGCG 1 cut(s) 2688
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 8 cut(s) 202, 277, 722, 890, 2515, 2855, 2968, 3111
BshNI GGYRCC 2 cut(s) 962, 2737
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 615, 1225
BsiSI CCGG 3 cut(s) 104, 346, 599
BslFI GGGAC 4 cut(s) 1818, 2453, 2736, 2913
BslI CCNNNNNNNGG 8 cut(s) 605, 1897, 2229, 2276, 2402, 2734, 3016, 3062
BsmAI GTCTC 2 cut(s) 2884, 3082
BsmFI GGGAC 4 cut(s) 1818, 2453, 2736, 2913
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 8 cut(s) 202, 277, 722, 890, 2515, 2855, 2968, 3111
Bso31I GGTCTC 2 cut(s) 2884, 3082
Bsp119I TTCGAA 1 cut(s) 1669
Bsp1286I GDGCHC 5 cut(s) 615, 967, 1225, 1299, 1885
Bsp1407I TGTACA 2 cut(s) 291, 2374
Bsp19I CCATGG 1 cut(s) 2489
BspANI GGCC 8 cut(s) 202, 277, 722, 890, 2515, 2855, 2968, 3111
BspCNI CTCAG 6 cut(s) 184, 1462, 1888, 2035, 2824, 3052
BspFNI CGCG 1 cut(s) 2688
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 6 cut(s) 923, 964, 2548, 2739, 2929, 3000
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 8 cut(s) 336, 545, 656, 1399, 1916, 2213, 2993, 3006
BspT104I TTCGAA 1 cut(s) 1669
BspT107I GGYRCC 2 cut(s) 962, 2737
BspTNI GGTCTC 2 cut(s) 2884, 3082
BsrBI CCGCTC 1 cut(s) 2579
BsrDI GCAATG 3 cut(s) 515, 676, 2629
BsrGI TGTACA 2 cut(s) 291, 2374
BsrI ACTGG 6 cut(s) 77, 114, 822, 904, 1062, 2936
BssECI CCNNGG 8 cut(s) 278, 317, 717, 879, 1798, 2489, 2912, 2994
BssT1I CCWWGG 3 cut(s) 317, 717, 2489
Bst4CI ACNGT 5 cut(s) 291, 1447, 1845, 2096, 2732
Bst6I CTCTTC 4 cut(s) 1273, 1620, 1666, 3070
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 2 cut(s) 291, 2374
BstBI TTCGAA 1 cut(s) 1669
BstC8I GCNNGC 8 cut(s) 30, 714, 1144, 1148, 1242, 1423, 2451, 2646
BstDEI CTNAG 9 cut(s) 192, 536, 926, 1470, 1896, 2043, 2418, 2811, 3039
BstDSI CCRYGG 1 cut(s) 2489
BstENI CCTNNNNNAGG 1 cut(s) 1895
BstF5I GGATG 8 cut(s) 563, 700, 1003, 1610, 2131, 2256, 2758, 3098
BstFNI CGCG 1 cut(s) 2688
BstHHI GCGC 4 cut(s) 990, 1774, 2354, 2690
BstMAI GTCTC 2 cut(s) 2884, 3082
BstMCI CGRYCG 1 cut(s) 108
BstNSI RCATGY 3 cut(s) 241, 2241, 2609
BstPAI GACNNNNGTC 1 cut(s) 1800
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 2 cut(s) 967, 1885
BstUI CGCG 1 cut(s) 2688
BstV1I GCAGC 8 cut(s) 346, 383, 387, 395, 805, 1441, 1861, 2545
BstV2I GAAGAC 4 cut(s) 629, 1584, 2027, 2566
BstX2I RGATCY 3 cut(s) 341, 1391, 2998
BstYI RGATCY 3 cut(s) 341, 1391, 2998
Bsu36I CCTNAGG 2 cut(s) 192, 1896
BsuI GTATCC 2 cut(s) 51, 2227
BsuRI GGCC 8 cut(s) 202, 277, 722, 890, 2515, 2855, 2968, 3111
BtgI CCRYGG 1 cut(s) 2489
BtgZI GCGATG 1 cut(s) 2586
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 8 cut(s) 563, 700, 1003, 1610, 2131, 2256, 2758, 3098
BtsI GCAGTG 2 cut(s) 1754, 2248
BtsIMutI CAGTG 6 cut(s) 239, 1055, 1692, 1754, 2101, 2248
Cac8I GCNNGC 8 cut(s) 30, 714, 1144, 1148, 1242, 1423, 2451, 2646
CciI TCATGA 1 cut(s) 1492
CfoI GCGC 4 cut(s) 990, 1774, 2354, 2690
Cfr13I GGNCC 6 cut(s) 921, 1361, 1795, 2854, 2927, 2966
CseI GACGC 2 cut(s) 1247, 1298
Csp6I GTAC 5 cut(s) 151, 292, 523, 901, 2375
CviQI GTAC 5 cut(s) 151, 292, 523, 901, 2375
DdeI CTNAG 9 cut(s) 192, 536, 926, 1470, 1896, 2043, 2418, 2811, 3039
DraI TTTAAA 1 cut(s) 1840
DrdI GACNNNNNNGTC 1 cut(s) 2342
DseDI GACNNNNNNGTC 1 cut(s) 2342
EaeI YGGCCR 3 cut(s) 720, 888, 3109
Eam1104I CTCTTC 4 cut(s) 1273, 1620, 1666, 3070
EarI CTCTTC 4 cut(s) 1273, 1620, 1666, 3070
Ecl136II GAGCTC 1 cut(s) 1223
Eco130I CCWWGG 3 cut(s) 317, 717, 2489
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 1225, 1299
Eco31I GGTCTC 2 cut(s) 2884, 3082
Eco32I GATATC 1 cut(s) 1130
Eco47I GGWCC 4 cut(s) 921, 1361, 1795, 2927
Eco53kI GAGCTC 1 cut(s) 1223
Eco57I CTGAAG 5 cut(s) 408, 1256, 1341, 1593, 1716
Eco81I CCTNAGG 2 cut(s) 192, 1896
EcoICRI GAGCTC 1 cut(s) 1223
EcoNI CCTNNNNNAGG 1 cut(s) 1895
EcoO109I RGGNCCY 3 cut(s) 1361, 1795, 2927
EcoRV GATATC 1 cut(s) 1130
EcoT14I CCWWGG 3 cut(s) 317, 717, 2489
EcoT38I GRGCYC 2 cut(s) 1225, 1299
ErhI CCWWGG 3 cut(s) 317, 717, 2489
FalI AAGNNNNNCTT 2 cut(s) 2019, 2051
FaqI GGGAC 4 cut(s) 1818, 2453, 2736, 2913
FauI CCCGC 1 cut(s) 1155
FauNDI CATATG 4 cut(s) 1047, 2348, 2518, 2659
FbaI TGATCA 1 cut(s) 2716
FblI GTMKAC 1 cut(s) 108
FokI GGATG 8 cut(s) 570, 707, 1010, 1617, 2118, 2263, 2745, 3085
FriOI GRGCYC 2 cut(s) 1225, 1299
FspBI CTAG 5 cut(s) 29, 318, 1808, 2529, 2745
FspI TGCGCA 1 cut(s) 2353
GlaI GCGC 4 cut(s) 989, 1773, 2353, 2689
GsaI CCCAGC 1 cut(s) 3106
GsuI CTGGAG 3 cut(s) 873, 1079, 2565
HaeIII GGCC 8 cut(s) 202, 277, 722, 890, 2515, 2855, 2968, 3111
HapII CCGG 3 cut(s) 104, 346, 599
HgaI GACGC 2 cut(s) 1247, 1298
HhaI GCGC 4 cut(s) 990, 1774, 2354, 2690
Hin6I GCGC 4 cut(s) 988, 1772, 2352, 2688
HinP1I GCGC 4 cut(s) 988, 1772, 2352, 2688
HincII GTYRAC 2 cut(s) 109, 1805
HindII GTYRAC 2 cut(s) 109, 1805
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 8 cut(s) 100, 331, 464, 955, 1063, 1313, 2081, 2474
HpaII CCGG 3 cut(s) 104, 346, 599
Hpy166II GTNNAC 4 cut(s) 109, 1598, 1805, 2174
Hpy8I GTNNAC 4 cut(s) 109, 1598, 1805, 2174
Hpy99I CGWCG 6 cut(s) 53, 56, 59, 92, 95, 770
HpyAV CCTTC 9 cut(s) 213, 599, 824, 841, 1374, 1691, 1724, 1901, 2240
HpyCH4III ACNGT 5 cut(s) 291, 1447, 1845, 2096, 2732
HpyCH4IV ACGT 3 cut(s) 93, 673, 1657
HpyF3I CTNAG 9 cut(s) 192, 536, 926, 1470, 1896, 2043, 2418, 2811, 3039
HpySE526I ACGT 3 cut(s) 93, 673, 1657
HspAI GCGC 4 cut(s) 988, 1772, 2352, 2688
Ksp22I TGATCA 1 cut(s) 2716
LmnI GCTCC 4 cut(s) 610, 1168, 2546, 2911
Lsp1109I GCAGC 8 cut(s) 346, 383, 387, 395, 805, 1441, 1861, 2545
MaeI CTAG 5 cut(s) 29, 318, 1808, 2529, 2745
MaeII ACGT 3 cut(s) 93, 673, 1657
MaeIII GTNAC 3 cut(s) 1688, 2119, 2834
MbiI CCGCTC 1 cut(s) 2579
MfeI CAATTG 3 cut(s) 300, 510, 2177
MflI RGATCY 3 cut(s) 341, 1391, 2998
MhlI GDGCHC 5 cut(s) 615, 967, 1225, 1299, 1885
MlsI TGGCCA 2 cut(s) 722, 890
MluNI TGGCCA 2 cut(s) 722, 890
MmeI TCCRAC 2 cut(s) 1006, 1168
Mox20I TGGCCA 2 cut(s) 722, 890
MroXI GAANNNNTTC 2 cut(s) 1488, 1665
MscI TGGCCA 2 cut(s) 722, 890
MslI CAYNNNNRTG 2 cut(s) 1747, 2865
Msp20I TGGCCA 2 cut(s) 722, 890
MspA1I CMGCKG 2 cut(s) 386, 1855
MspI CCGG 3 cut(s) 104, 346, 599
MunI CAATTG 3 cut(s) 300, 510, 2177
Mva1269I GAATGC 1 cut(s) 448
MvnI CGCG 1 cut(s) 2688
NciI CCSGG 2 cut(s) 346, 600
NcoI CCATGG 1 cut(s) 2489
NdeI CATATG 4 cut(s) 1047, 2348, 2518, 2659
NheI GCTAGC 1 cut(s) 28
NlaIV GGNNCC 6 cut(s) 923, 964, 2548, 2739, 2929, 3000
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 2834
NsbI TGCGCA 1 cut(s) 2353
NspI RCATGY 3 cut(s) 241, 2241, 2609
NspV TTCGAA 1 cut(s) 1669
PagI TCATGA 1 cut(s) 1492
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 2605
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 2 cut(s) 1488, 1665
PfeI GAWTC 8 cut(s) 100, 331, 464, 955, 1063, 1313, 2081, 2474
PflMI CCANNNNNTGG 4 cut(s) 2276, 2734, 3016, 3062
PfoI TCCNGGA 3 cut(s) 481, 553, 2542
PpuMI RGGWCCY 3 cut(s) 1361, 1795, 2927
PscI ACATGT 1 cut(s) 2605
PshAI GACNNNNGTC 1 cut(s) 1800
PsiI TTATAA 1 cut(s) 2946
Psp124BI GAGCTC 1 cut(s) 1225
Psp5II RGGWCCY 3 cut(s) 1361, 1795, 2927
PspFI CCCAGC 1 cut(s) 3102
PspN4I GGNNCC 6 cut(s) 923, 964, 2548, 2739, 2929, 3000
PspPI GGNCC 6 cut(s) 921, 1361, 1795, 2854, 2927, 2966
PspPPI RGGWCCY 3 cut(s) 1361, 1795, 2927
PsuI RGATCY 3 cut(s) 341, 1391, 2998
PvuII CAGCTG 2 cut(s) 386, 1855
RsaI GTAC 5 cut(s) 152, 293, 524, 902, 2376
RsaNI GTAC 5 cut(s) 151, 292, 523, 901, 2375
RseI CAYNNNNRTG 2 cut(s) 1747, 2865
SacI GAGCTC 1 cut(s) 1225
SalI GTCGAC 1 cut(s) 107
Sau96I GGNCC 6 cut(s) 921, 1361, 1795, 2854, 2927, 2966
ScaI AGTACT 1 cut(s) 524
SduI GDGCHC 5 cut(s) 615, 967, 1225, 1299, 1885
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 1669
SinI GGWCC 4 cut(s) 921, 1361, 1795, 2927
SmiMI CAYNNNNRTG 2 cut(s) 1747, 2865
SmlI CTYRAG 3 cut(s) 1523, 1790, 2763
SmoI CTYRAG 3 cut(s) 1523, 1790, 2763
SseBI AGGCCT 1 cut(s) 202
SspI AATATT 3 cut(s) 916, 935, 1209
SspMI CTAG 5 cut(s) 29, 318, 1808, 2529, 2745
SstI GAGCTC 1 cut(s) 1225
StuI AGGCCT 1 cut(s) 202
StyI CCWWGG 3 cut(s) 317, 717, 2489
TaaI ACNGT 5 cut(s) 291, 1447, 1845, 2096, 2732
TaiI ACGT 3 cut(s) 96, 676, 1660
TaqII GACCGA 1 cut(s) 1790
TatI WGTACW 3 cut(s) 291, 522, 2374
TauI GCSGC 5 cut(s) 277, 383, 2579, 2971, 3114
TfiI GAWTC 8 cut(s) 100, 331, 464, 955, 1063, 1313, 2081, 2474
TscAI CASTG 6 cut(s) 239, 1062, 1699, 1754, 2101, 2248
TseFI GTSAC 1 cut(s) 2834
TseI GCWGC 8 cut(s) 359, 371, 383, 400, 818, 1454, 1874, 2533
Tsp45I GTSAC 1 cut(s) 2834
TspGWI ACGGA 3 cut(s) 859, 2021, 2087
TspRI CASTG 6 cut(s) 239, 1062, 1699, 1754, 2101, 2248
Van91I CCANNNNNTGG 4 cut(s) 2276, 2734, 3016, 3062
VpaK11BI GGWCC 4 cut(s) 921, 1361, 1795, 2927
XagI CCTNNNNNAGG 1 cut(s) 1895
XapI RAATTY 3 cut(s) 1109, 1153, 2827
XceI RCATGY 3 cut(s) 241, 2241, 2609
XmaJI CCTAGG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 2 cut(s) 1488, 1665
XspI CTAG 5 cut(s) 29, 318, 1808, 2529, 2745
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.