Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003200

Physical Location & Seq

Genomic Coordinates Forward (+)

1121989 .. 1126888

Gene Structure 4900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTGCAGCTGGAGACATACACCAAGGAACTTGATGAAATGCAGAAGGTGTCCAAGGAAGAATACTTGGCTTCATTGCGCCGCCGGAGCAGTGGGTTTTCTAGAGGCGTTTCAAAGTATCGTGGGGTGGCTAGGCATCACCATAATGGGCGATGGGAGGCGCGAATTGGGAGAGTTTTCGGAAACAAGTATTTGTACCTGGGAACTTACAGCAGCAGTAATGATAATTGGGCAAATTGGCTTATTCCATTTTGTTTGACAACTGACATTGGGTGGAGAATGCAACTTGGGAAGAGATTTTGGGTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCAAGATTTGTCAGTTGATGAAATTAAGGCTGAGCTCTCTCATTTCAAAGGAATAGGTCCAAAAACGGTGGCTTGTGTTTTAATGTTCCAACTTCAGCAAGATAGTTTTCCTGTGGACACCCATGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAGTGCATCAAGAAAGGAGGTAGCACTAGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATGTATGCAATCTGCAATGAAGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

268

Amino Acids

30.86

Weight (kDa)

8.9

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47830
fragaria_vesca	FvH4_5g16440 FvH4_5g16440 FvH4_5g16440
malus_domestica	MD06G1180800.v1.1
prunus_persica	Prupe.5G178800_v2.0.a1
pyrus_communis	pycom06g15990
rosa_chinensis	RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661
rosa_laevigata	RLG00000005332 RLG00000018712
rosa_multiflora	Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121220
rosa_rugosa	Rorug06G0427000 Rorug06G0427000 Rorug06G0427100
rosa_samantha	Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400
rosa_wichuraiana	Rw0G007640 Rw7G002140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	163
AciI	CCGC	2 cut(s)	82, 703
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	197, 434
AgsI	TTSAA	2 cut(s)	114, 484
AhlI	ACTAGT	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	1 cut(s)	560
AluBI	AGCT	7 cut(s)	10, 327, 359, 371, 421, 472, 697
AluI	AGCT	7 cut(s)	10, 327, 359, 371, 421, 472, 697
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	8
ApeKI	GCWGC	5 cut(s)	4, 7, 213, 311, 739
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	81, 163
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	19, 225, 298, 751
BccI	CCATC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	8
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	3 cut(s)	102, 132, 732
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	7 cut(s)	5, 8, 82, 214, 312, 703, 740
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	7 cut(s)	6, 9, 83, 215, 313, 704, 741
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	145, 720
BpmI	CTGGAG	2 cut(s)	32, 425
Bpu1102I	GCTNAGC	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	24, 54, 199
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	2 cut(s)	74, 799
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	24, 54, 199
BseMI	GCAATG	2 cut(s)	74, 799
BseMII	CTCAG	2 cut(s)	383, 459
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	19, 225, 298, 751
Bsh1236I	CGCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	664
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	2 cut(s)	82, 703
BspCNI	CTCAG	2 cut(s)	384, 460
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	74, 799
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	3 cut(s)	24, 54, 199
BssMI	GATC	1 cut(s)	664
BssNAI	GTATAC	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	24, 54
Bst1107I	GTATAC	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	328, 360, 392, 468
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	81, 163
BstKTI	GATC	1 cut(s)	667
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 708
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	5
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	19, 225, 298, 751
BstZ17I	GTATAC	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	636
BtgZI	GCGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	444
CfoI	GCGC	2 cut(s)	81, 163
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	196, 433
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	5 cut(s)	388, 560, 689, 778, 802
CviQI	GTAC	2 cut(s)	196, 433
DdeI	CTNAG	4 cut(s)	328, 360, 392, 468
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	24, 54
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	24, 54
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	2 cut(s)	24, 54
FaeI	CATG	5 cut(s)	391, 563, 692, 781, 805
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	5 cut(s)	387, 559, 688, 777, 801
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	7 cut(s)	5, 8, 82, 214, 312, 703, 740
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	7 cut(s)	5, 8, 82, 214, 312, 703, 740
FspBI	CTAG	3 cut(s)	102, 132, 732
GlaI	GCGC	2 cut(s)	80, 162
GluI	GCNGC	7 cut(s)	5, 8, 82, 214, 312, 703, 740
GsuI	CTGGAG	2 cut(s)	32, 425
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	2 cut(s)	81, 163
Hin1II	CATG	5 cut(s)	391, 563, 692, 781, 805
Hin6I	GCGC	2 cut(s)	79, 161
HinP1I	GCGC	2 cut(s)	79, 161
HindIII	AAGCTT	3 cut(s)	325, 369, 419
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	553, 684
Hpy188I	TCNGA	2 cut(s)	182, 669
Hpy188III	TCNNGA	2 cut(s)	102, 715
Hpy8I	GTNNAC	2 cut(s)	553, 684
HpyAV	CCTTC	3 cut(s)	40, 406, 686
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	8 cut(s)	7, 43, 283, 439, 575, 711, 785, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 708
HpyF3I	CTNAG	4 cut(s)	328, 360, 392, 468
Hsp92II	CATG	5 cut(s)	391, 563, 692, 781, 805
HspAI	GCGC	2 cut(s)	79, 161
Kzo9I	GATC	1 cut(s)	664
LmnI	GCTCC	2 cut(s)	87, 602
LpnPI	CCDG	9 cut(s)	98, 185, 212, 389, 449, 561, 595, 609, 660
Lsp1109I	GCAGC	4 cut(s)	19, 225, 298, 751
LweI	GCATC	2 cut(s)	145, 720
MaeI	CTAG	3 cut(s)	102, 132, 732
MalI	GATC	1 cut(s)	666
MboI	GATC	1 cut(s)	664
MboII	GAAGA	4 cut(s)	71, 304, 421, 617
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	6 cut(s)	165, 226, 235, 459, 659, 766
MmeI	TCCRAC	3 cut(s)	550, 580, 795
MnlI	CCTC	4 cut(s)	98, 151, 716, 751
MseI	TTAA	5 cut(s)	381, 462, 518, 633, 657
MslI	CAYNNNNRTG	2 cut(s)	144, 560
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	87, 708
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	5 cut(s)	391, 563, 692, 781, 805
NlaIV	GGNNCC	1 cut(s)	594
NspI	RCATGY	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	560
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	7 cut(s)	6, 9, 83, 215, 313, 704, 741
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	2 cut(s)	197, 434
RsaNI	GTAC	2 cut(s)	196, 433
RseI	CAYNNNNRTG	2 cut(s)	144, 560
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	5 cut(s)	381, 462, 518, 633, 657
SatI	GCNGC	7 cut(s)	5, 8, 82, 214, 312, 703, 740
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	2 cut(s)	145, 720
SfcI	CTRYAG	1 cut(s)	5
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	144, 560
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	6 cut(s)	165, 226, 235, 459, 659, 766
SsiI	CCGC	2 cut(s)	82, 703
SspMI	CTAG	3 cut(s)	102, 132, 732
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	24, 54
TaaI	ACNGT	1 cut(s)	505
TasI	AATT	6 cut(s)	165, 226, 235, 459, 659, 766
TauI	GCSGC	2 cut(s)	84, 705
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	5 cut(s)	381, 462, 518, 633, 657
Tru9I	TTAA	5 cut(s)	381, 462, 518, 633, 657
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	5 cut(s)	4, 7, 213, 311, 739
TspDTI	ATGAA	6 cut(s)	51, 63, 471, 617, 666, 766
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	659
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	3 cut(s)	102, 132, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.