HhH-GPD superfamily base excision DNA repair protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47830 |
| fragaria_vesca | FvH4_5g16440 FvH4_5g16440 FvH4_5g16440 |
| malus_domestica | MD06G1180800.v1.1 |
| prunus_persica | Prupe.5G178800_v2.0.a1 |
| pyrus_communis | pycom06g15990 |
| rosa_chinensis | RchiOBHm_Chr1g0373451 RchiOBHm_Chr3g0449251 RchiOBHm_Chr7g0179661 |
| rosa_laevigata | RLG00000005332 RLG00000018712 |
| rosa_multiflora | Rmu_sc0003401.1_g000007 Rmu_sc0005329.1_g000031 Rmu_sc0005329.1_g000032 Rmu_sc0014983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00121220 |
| rosa_rugosa | Rorug06G0427000 Rorug06G0427000 Rorug06G0427100 |
| rosa_samantha | Rh2AG300800 Rh2DG325000 Rh3CG300600 Rh4DG183400 Rh5AG131100 Rh5DG127000 Rh5DG267900 Rh6BG070700 Rh6BG136400 Rh6CG134800 Rh7AG026500 Rh7AG230200 Rh7BG025700 Rh7CG027700 Rh7DG027400 |
| rosa_wichuraiana | Rw0G007640 Rw7G002140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 184 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AleI | CACNNNNGTG | 1 cut(s) | 41 |
| AluBI | AGCT | 1 cut(s) | 178 |
| AluI | AGCT | 1 cut(s) | 178 |
| ApeKI | GCWGC | 1 cut(s) | 220 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| BbvI | GCAGC | 1 cut(s) | 232 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 262 |
| BciVI | GTATCC | 1 cut(s) | 117 |
| BfuI | GTATCC | 1 cut(s) | 117 |
| BisI | GCNGC | 2 cut(s) | 184, 221 |
| BlsI | GCNGC | 2 cut(s) | 185, 222 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmsI | GCATC | 1 cut(s) | 201 |
| Bse1I | ACTGG | 2 cut(s) | 77, 217 |
| Bse3DI | GCAATG | 1 cut(s) | 280 |
| BseMI | GCAATG | 1 cut(s) | 280 |
| BseNI | ACTGG | 2 cut(s) | 77, 217 |
| BseXI | GCAGC | 1 cut(s) | 232 |
| Bsp143I | GATC | 1 cut(s) | 145 |
| BspACI | CCGC | 1 cut(s) | 184 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BsrDI | GCAATG | 1 cut(s) | 280 |
| BsrI | ACTGG | 2 cut(s) | 77, 217 |
| BssMI | GATC | 1 cut(s) | 145 |
| BstKTI | GATC | 1 cut(s) | 148 |
| BstMBI | GATC | 1 cut(s) | 145 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 189 |
| BstV1I | GCAGC | 1 cut(s) | 232 |
| BsuI | GTATCC | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| CviAII | CATG | 3 cut(s) | 41, 170, 259 |
| CviJI | RGCY | 3 cut(s) | 62, 68, 178 |
| CviKI_1 | RGCY | 3 cut(s) | 62, 68, 178 |
| DpnI | GATC | 1 cut(s) | 147 |
| DpnII | GATC | 1 cut(s) | 145 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| FaeI | CATG | 3 cut(s) | 44, 173, 262 |
| FaiI | YATR | 8 cut(s) | 42, 65, 103, 163, 165, 171, 260, 264 |
| FatI | CATG | 3 cut(s) | 40, 169, 258 |
| Fnu4HI | GCNGC | 2 cut(s) | 184, 221 |
| Fsp4HI | GCNGC | 2 cut(s) | 184, 221 |
| GluI | GCNGC | 2 cut(s) | 184, 221 |
| Hin1II | CATG | 3 cut(s) | 44, 173, 262 |
| Hpy166II | GTNNAC | 1 cut(s) | 34 |
| Hpy188I | TCNGA | 1 cut(s) | 150 |
| Hpy188III | TCNNGA | 1 cut(s) | 196 |
| Hpy8I | GTNNAC | 1 cut(s) | 34 |
| HpyAV | CCTTC | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 4 cut(s) | 56, 192, 266, 273 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 189 |
| Hsp92II | CATG | 3 cut(s) | 44, 173, 262 |
| Kzo9I | GATC | 1 cut(s) | 145 |
| LmnI | GCTCC | 1 cut(s) | 83 |
| LpnPI | CCDG | 5 cut(s) | 42, 76, 90, 141, 198 |
| Lsp1109I | GCAGC | 1 cut(s) | 232 |
| LweI | GCATC | 1 cut(s) | 201 |
| MalI | GATC | 1 cut(s) | 147 |
| MboI | GATC | 1 cut(s) | 145 |
| MboII | GAAGA | 1 cut(s) | 98 |
| MluCI | AATT | 3 cut(s) | 140, 247, 267 |
| MmeI | TCCRAC | 3 cut(s) | 31, 61, 276 |
| MnlI | CCTC | 1 cut(s) | 197 |
| MseI | TTAA | 2 cut(s) | 114, 138 |
| MslI | CAYNNNNRTG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 189 |
| NdeII | GATC | 1 cut(s) | 145 |
| NlaIII | CATG | 3 cut(s) | 44, 173, 262 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| OliI | CACNNNNGTG | 1 cut(s) | 41 |
| PkrI | GCNGC | 2 cut(s) | 185, 222 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| RseI | CAYNNNNRTG | 1 cut(s) | 41 |
| SaqAI | TTAA | 2 cut(s) | 114, 138 |
| SatI | GCNGC | 2 cut(s) | 184, 221 |
| Sau3AI | GATC | 1 cut(s) | 145 |
| SetI | ASST | 2 cut(s) | 180, 208 |
| SfaNI | GCATC | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 41 |
| Sse9I | AATT | 3 cut(s) | 140, 247, 267 |
| SsiI | CCGC | 1 cut(s) | 184 |
| TasI | AATT | 3 cut(s) | 140, 247, 267 |
| TauI | GCSGC | 1 cut(s) | 186 |
| Tru1I | TTAA | 2 cut(s) | 114, 138 |
| Tru9I | TTAA | 2 cut(s) | 114, 138 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TseI | GCWGC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 3 cut(s) | 98, 147, 247 |
| TspRI | CASTG | 1 cut(s) | 217 |
| XapI | RAATTY | 1 cut(s) | 140 |