Rh7AG026500
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003200
Physical Location & Seq
Reverse (-)
1762569 .. 1765902
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG026500.1

Sequence Viewer

Length: 735 bp
ATGAGTCCGACTAAGCCCAACTTATTTACAGCGCGCCCGCGCCTGGAAAAGAATACCCAAGGCGGAGCTACCACAACAACAATGCCGAAAAGCCGCAAAAGAAGGCAGCAGGTGGAGGTTGACCACCACCCAAAACCTCCAACCAAAACACCCAAAACCACCAAAGAGACGCCAAAGGACCCATACCCGAATCACGCCCGACCCACCCGAGAAGAATGCGTGTCCGTCCGAGACGACCTCTTGGCCCTCCACGGCTTCCCCCAAGAGTTCGCCAAGTACCGAGAACAGCGACTGAGTTCTCAAGCATCCAACGGCTGCGTCCCTGCCGTCAGTTCAGAGCCGTCGGATGAAAAAGAGAGTGTCTTGGATGGTTTAGTGAGAACTCTATTGTCTCAGAATACCACGGAAGCTAATTCCCAGAAAGCCTTTGCTTCTCTCAAGTCAGCTTTTCCAACTTGGGAAGAGGTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGTGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGCTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCGAGATTTGTCAGTTGATGAAATTAAGGCTGAGCTCTCTCGTTTCAAAGGAATAGGTCCAAAAACGGTGGCTTGTGTTTTAATGTTCCAACTTCAGCAAGATGATTTTCCTGTGGACACCCATGTGAGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

244

Amino Acids

27.1

Weight (kDa)

8.77

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 126 - 242 2.6e-09 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 2 cut(s) 100, 606
AccII CGCG 2 cut(s) 34, 40
AciI CCGC 3 cut(s) 38, 63, 94
AcuI CTGAAG 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 2 cut(s) 278, 596
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 646
AjnI CCWGG 1 cut(s) 42
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 8 cut(s) 68, 410, 446, 489, 521, 533, 583, 634
AluI AGCT 8 cut(s) 68, 410, 446, 489, 521, 533, 583, 634
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 3 cut(s) 161, 225, 396
AlwNI CAGNNNCTG 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 106, 315, 473
AspLEI GCGC 3 cut(s) 34, 36, 42
AspS9I GGNCC 3 cut(s) 178, 244, 656
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 2 cut(s) 178, 656
BanII GRGCYC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 118, 302, 460
BccI CCATC 1 cut(s) 362
BceAI ACGGC 4 cut(s) 268, 311, 325, 328
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 161, 225, 396
BfuAI ACCTGC 2 cut(s) 100, 606
BisI GCNGC 4 cut(s) 94, 107, 316, 474
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 4 cut(s) 95, 108, 317, 475
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 178, 656
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 3 cut(s) 178, 244, 656
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpmI CTGGAG 1 cut(s) 587
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 285, 422
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 58, 250, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 58, 250, 402
BseGI GGATG 3 cut(s) 305, 352, 373
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 4 cut(s) 284, 407, 545, 621
BsePI GCGCGC 1 cut(s) 32
BseXI GCAGC 3 cut(s) 118, 302, 460
Bsh1236I CGCG 2 cut(s) 34, 40
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 3 cut(s) 161, 225, 396
BsmBI CGTCTC 2 cut(s) 161, 225
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 636
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 3 cut(s) 38, 63, 94
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 4 cut(s) 285, 406, 546, 622
BspFNI CGCG 2 cut(s) 34, 40
BspLI GGNNCC 1 cut(s) 180
BspMI ACCTGC 2 cut(s) 100, 606
BssECI CCNNGG 3 cut(s) 58, 250, 402
BssHII GCGCGC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 667
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 34, 38
BstDEI CTNAG 7 cut(s) 12, 293, 393, 490, 522, 554, 630
BstDSI CCRYGG 2 cut(s) 250, 402
BstF5I GGATG 3 cut(s) 305, 352, 373
BstFNI CGCG 2 cut(s) 34, 40
BstHHI GCGC 3 cut(s) 34, 36, 42
BstMAI GTCTC 3 cut(s) 161, 225, 396
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 2 cut(s) 34, 40
BstV1I GCAGC 3 cut(s) 118, 302, 460
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 2 cut(s) 250, 402
BtsCI GGATG 3 cut(s) 305, 352, 373
BveI ACCTGC 2 cut(s) 100, 606
Cac8I GCNNGC 2 cut(s) 34, 38
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 3 cut(s) 34, 36, 42
Cfr13I GGNCC 3 cut(s) 178, 244, 656
CseI GACGC 2 cut(s) 178, 307
Csp6I GTAC 2 cut(s) 277, 595
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 2 cut(s) 550, 722
CviQI GTAC 2 cut(s) 277, 595
DdeI CTNAG 7 cut(s) 12, 293, 393, 490, 522, 554, 630
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 178, 656
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 2 cut(s) 161, 225
FaeI CATG 2 cut(s) 553, 725
FaiI YATR 4 cut(s) 184, 503, 551, 723
FalI AAGNNNNNCTT 3 cut(s) 37, 572, 604
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 549, 721
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 94, 107, 316, 474
FokI GGATG 3 cut(s) 292, 359, 380
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 4 cut(s) 94, 107, 316, 474
GlaI GCGC 3 cut(s) 33, 35, 41
GluI GCNGC 4 cut(s) 94, 107, 316, 474
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 2 cut(s) 178, 307
HhaI GCGC 3 cut(s) 34, 36, 42
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 2 cut(s) 553, 725
Hin6I GCGC 3 cut(s) 32, 34, 40
HinP1I GCGC 3 cut(s) 32, 34, 40
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 3 cut(s) 487, 531, 581
HinfI GANTC 3 cut(s) 4, 190, 479
Hpy166II GTNNAC 2 cut(s) 121, 715
Hpy188I TCNGA 5 cut(s) 9, 230, 337, 346, 396
Hpy8I GTNNAC 2 cut(s) 121, 715
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 96, 568
HpyCH4III ACNGT 1 cut(s) 667
HpyF3I CTNAG 7 cut(s) 12, 293, 393, 490, 522, 554, 630
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 553, 725
HspAI GCGC 3 cut(s) 32, 34, 40
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 29, 56, 95, 336, 431, 551, 611, 723
Lsp1109I GCAGC 3 cut(s) 118, 302, 460
LweI GCATC 1 cut(s) 314
MboII GAAGA 3 cut(s) 224, 473, 583
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 2 cut(s) 412, 621
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 6 cut(s) 32, 164, 324, 333, 476, 712
MnlI CCTC 5 cut(s) 109, 147, 248, 257, 457
MseI TTAA 3 cut(s) 543, 624, 680
MslI CAYNNNNRTG 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 2 cut(s) 34, 40
NlaIII CATG 2 cut(s) 553, 725
NlaIV GGNNCC 1 cut(s) 180
NspI RCATGY 1 cut(s) 553
OliI CACNNNNGTG 1 cut(s) 722
PaqCI CACCTGC 1 cut(s) 100
PauI GCGCGC 1 cut(s) 32
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 190, 479
PkrI GCNGC 4 cut(s) 95, 108, 317, 475
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 3 cut(s) 178, 244, 656
PspPPI RGGWCCY 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 292
PteI GCGCGC 1 cut(s) 32
RsaI GTAC 2 cut(s) 278, 596
RsaNI GTAC 2 cut(s) 277, 595
RseI CAYNNNNRTG 1 cut(s) 722
SacI GAGCTC 1 cut(s) 636
SaqAI TTAA 3 cut(s) 543, 624, 680
SatI GCNGC 4 cut(s) 94, 107, 316, 474
Sau96I GGNCC 3 cut(s) 178, 244, 656
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 2 cut(s) 178, 656
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 300, 437
SmoI CTYRAG 2 cut(s) 300, 437
Sse9I AATT 2 cut(s) 412, 621
SsiI CCGC 3 cut(s) 38, 63, 94
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 667
TasI AATT 2 cut(s) 412, 621
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 2 cut(s) 190, 479
Tru1I TTAA 3 cut(s) 543, 624, 680
Tru9I TTAA 3 cut(s) 543, 624, 680
TseI GCWGC 3 cut(s) 106, 315, 473
TspDTI ATGAA 2 cut(s) 363, 633
TspGWI ACGGA 2 cut(s) 214, 419
VpaK11BI GGWCC 2 cut(s) 178, 656
XceI RCATGY 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.