Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

17931705 .. 17934744

Gene Structure 3040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48425.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAGCGATTCTTCAAGCCCATAGAGAAGGAGAATTCTCCGGCGGCTAAGAAACCCTGCCTTTCGCCGGAAAAGCGTGACGGAGACGGAGATGGAGTTGAAGAAGAGAAGAACCAGAACGAGCCGTCCAAGTTTATGACGTGGAACGCTAATAGCTTCCTCCTTCGGGTGAAAAATGACTGGTCTCAGTTCTCTAAGTTCGTCTCCGATTTTGACCCCGATGTCATCGCCATACAGGAAGTAAGGATGCCTGCTGCTGGTGGAAAGGGAAAACCTAAAAACCATGAAGAGTTGAGTGATGACACGAAAGTTTTGCGTGAGGAAAAACAGATTTTGACACGGGCTCTCTCAAGTCCACCATTTGGAAATTATGGGGTTTGGTGGTCTCTCGCGGACTCGAAGTATGCAGGGACAGCTTTGTTAGTGAAAAAATGTTTCAAGCCTCGAAAAGTTTACTTTAACTTGGACAAATTAGCATCTAAACATGAACCTGATGGTCGTGTTATCTTAGCTGAATTTGAGACATTTCGTCTTTTGAATACGTATTCGCCTAACAATGGTTGGAAAGATGAAGAGAATGCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAATTCCTCAACAAAACATCTGATAAACCGCTAATATGGTGTGGCGACTTAAATGTCAGTCATGAGGAGATAGATGTTAGCCACCCAGAATTTTTTGCTACAGCAAAGCTTAATGGTTATGTTCCTCCAAACAAAGAGGACTGCGGACAGCCTGGATTTACACCATCTGAGAGAGGACGCTTCGGGGCAACTATAAAAGAAGGAAGGCTTGTTGATGCATACCGGTATCTACACAAGGAGCAAGAAATGGAAAGTGGCTTCTCATGGTCGGGGAATCCCATTGGAAAGTACCGGGGAAAGAGGATGAGGATCGACTATTTTCTGGTCTCTGAACAACTCAAAGACCGTATAGTTTCTTGTAAGATGCACGGTCGTGGGATAGAACTTGAAGGTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAGCTTTCGAAGCCATCTTCAGAAATGGAACAGAACCAGGTGTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

364

Amino Acids

41.78

Weight (kDa)

8.35

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	46 - 343	5.3e-21	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	221, 671
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccII	CGCG	1 cut(s)	392
AciI	CCGC	4 cut(s)	44, 392, 647, 762
AclWI	GGATC	1 cut(s)	935
AcsI	RAATTY	4 cut(s)	34, 515, 620, 707
AcuI	CTGAAG	1 cut(s)	1047
AfaI	GTAC	1 cut(s)	908
AfiI	CCNNNNNNNGG	5 cut(s)	67, 166, 257, 362, 557
AgeI	ACCGGT	1 cut(s)	840
AgsI	TTSAA	6 cut(s)	16, 101, 439, 538, 620, 1007
AhdI	GACNNNNNGTC	1 cut(s)	528
AjiI	CACGTC	1 cut(s)	141
AjnI	CCWGG	2 cut(s)	769, 1080
AleI	CACNNNNGTG	1 cut(s)	990
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	5 cut(s)	156, 416, 512, 727, 1048
AluI	AGCT	5 cut(s)	156, 416, 512, 727, 1048
Alw26I	GTCTC	6 cut(s)	78, 189, 208, 390, 515, 949
AlwI	GGATC	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	1043
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	4 cut(s)	34, 515, 620, 707
AsiGI	ACCGGT	1 cut(s)	840
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	911
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	1052
AvaI	CYCGRG	1 cut(s)	1043
BanII	GRGCYC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	4 cut(s)	86, 488, 790, 1066
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	2 cut(s)	771, 1082
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	911
BcoDI	GTCTC	6 cut(s)	78, 189, 208, 390, 515, 949
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	2 cut(s)	45, 255
BlsI	GCNGC	2 cut(s)	46, 256
Bme1390I	CCNGG	3 cut(s)	771, 911, 1082
BmeRI	GACNNNNNGTC	1 cut(s)	528
BmeT110I	CYCGRG	1 cut(s)	1043
BmgBI	CACGTC	1 cut(s)	141
BmrFI	CCNGG	3 cut(s)	771, 911, 1082
BmsI	GCATC	4 cut(s)	237, 485, 823, 972
Bpu14I	TTCGAA	1 cut(s)	1052
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	911
BsaAI	YACGTR	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	926
BsaI	GGTCTC	3 cut(s)	189, 390, 949
BsaJI	CCNNGG	2 cut(s)	910, 1015
BsaWI	WCCGGW	2 cut(s)	840, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 166, 257, 362, 557
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	926
BseBI	CCWGG	2 cut(s)	771, 1082
BseDI	CCNNGG	2 cut(s)	910, 1015
BseGI	GGATG	2 cut(s)	252, 927
BseJI	GATNNNNATC	1 cut(s)	926
BseLI	CCNNNNNNNGG	5 cut(s)	67, 166, 257, 362, 557
BseMII	CTCAG	2 cut(s)	200, 777
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	604, 698
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	991
BshTI	ACCGGT	1 cut(s)	840
BsiEI	CGRYCG	1 cut(s)	991
BsiHKCI	CYCGRG	1 cut(s)	1043
BsiSI	CCGG	5 cut(s)	41, 68, 841, 910, 1034
BslFI	GGGAC	2 cut(s)	424, 617
BslI	CCNNNNNNNGG	5 cut(s)	67, 166, 257, 362, 557
BsmAI	GTCTC	6 cut(s)	78, 189, 208, 390, 515, 949
BsmBI	CGTCTC	2 cut(s)	78, 208
BsmFI	GGGAC	2 cut(s)	424, 617
BsmI	GAATGC	1 cut(s)	583
Bso31I	GGTCTC	3 cut(s)	189, 390, 949
BsoBI	CYCGRG	1 cut(s)	1043
Bsp119I	TTCGAA	1 cut(s)	1052
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	927, 1024
Bsp19I	CCATGG	1 cut(s)	1015
BspACI	CCGC	4 cut(s)	44, 392, 647, 762
BspCNI	CTCAG	2 cut(s)	199, 778
BspFNI	CGCG	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	679
BspPI	GGATC	1 cut(s)	935
BspT104I	TTCGAA	1 cut(s)	1052
BspTNI	GGTCTC	3 cut(s)	189, 390, 949
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	2 cut(s)	910, 1015
BssMI	GATC	2 cut(s)	927, 1024
BssT1I	CCWWGG	1 cut(s)	1015
Bst2UI	CCWGG	2 cut(s)	771, 1082
Bst4CI	ACNGT	2 cut(s)	965, 989
Bst6I	CTCTTC	3 cut(s)	99, 282, 567
BstBAI	YACGTR	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	1052
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	5 cut(s)	48, 186, 195, 508, 786
BstDSI	CCRYGG	1 cut(s)	1015
BstF5I	GGATG	2 cut(s)	252, 927
BstFNI	CGCG	1 cut(s)	392
BstKTI	GATC	2 cut(s)	930, 1027
BstMAI	GTCTC	6 cut(s)	78, 189, 208, 390, 515, 949
BstMBI	GATC	2 cut(s)	927, 1024
BstMCI	CGRYCG	1 cut(s)	991
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 413, 1054
BstNI	CCWGG	2 cut(s)	771, 1082
BstSCI	CCNGG	3 cut(s)	769, 909, 1080
BstSFI	CTRYAG	1 cut(s)	717
BstSNI	TACGTA	1 cut(s)	543
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	1015
BtgZI	GCGATG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	252, 927
Cac8I	GCNNGC	1 cut(s)	252
CciI	TCATGA	1 cut(s)	679
Cfr10I	RCCGGY	1 cut(s)	840
CseI	GACGC	1 cut(s)	804
CsiI	ACCWGGT	1 cut(s)	1080
Csp6I	GTAC	1 cut(s)	907
CspAI	ACCGGT	1 cut(s)	840
CviAII	CATG	5 cut(s)	284, 485, 680, 882, 1016
CviQI	GTAC	1 cut(s)	907
DdeI	CTNAG	5 cut(s)	48, 186, 195, 508, 786
DpnI	GATC	2 cut(s)	929, 1026
DpnII	GATC	2 cut(s)	927, 1024
DrdI	GACNNNNNNGTC	2 cut(s)	221, 671
DriI	GACNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	2 cut(s)	221, 671
Eam1104I	CTCTTC	3 cut(s)	99, 282, 567
Eam1105I	GACNNNNNGTC	1 cut(s)	528
EarI	CTCTTC	3 cut(s)	99, 282, 567
Eco105I	TACGTA	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	1015
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	3 cut(s)	189, 390, 949
Eco57I	CTGAAG	1 cut(s)	1047
Eco88I	CYCGRG	1 cut(s)	1043
EcoRI	GAATTC	2 cut(s)	34, 620
EcoRII	CCWGG	2 cut(s)	769, 1080
EcoT14I	CCWWGG	1 cut(s)	1015
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	1015
Esp3I	CGTCTC	2 cut(s)	78, 208
FaeI	CATG	5 cut(s)	287, 488, 683, 885, 1019
FalI	AAGNNNNNCTT	3 cut(s)	28, 810, 842
FaqI	GGGAC	2 cut(s)	424, 617
FatI	CATG	5 cut(s)	283, 484, 679, 881, 1015
FbaI	TGATCA	1 cut(s)	1024
Fnu4HI	GCNGC	2 cut(s)	45, 255
FokI	GGATG	2 cut(s)	259, 934
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	45, 255
GluI	GCNGC	2 cut(s)	45, 255
HapII	CCGG	5 cut(s)	41, 68, 841, 910, 1034
HgaI	GACGC	1 cut(s)	804
Hin1II	CATG	5 cut(s)	287, 488, 683, 885, 1019
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	3 cut(s)	9, 395, 892
HpaII	CCGG	5 cut(s)	41, 68, 841, 910, 1034
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	356, 454
Hpy188I	TCNGA	6 cut(s)	208, 588, 640, 787, 949, 1066
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	2 cut(s)	356, 454
HpyAV	CCTTC	5 cut(s)	22, 173, 812, 816, 1001
HpyCH4III	ACNGT	2 cut(s)	965, 989
HpyCH4IV	ACGT	2 cut(s)	140, 542
HpyCH4V	TGCA	3 cut(s)	407, 836, 985
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 413, 1054
HpyF3I	CTNAG	5 cut(s)	48, 186, 195, 508, 786
HpySE526I	ACGT	2 cut(s)	140, 542
Hsp92II	CATG	5 cut(s)	287, 488, 683, 885, 1019
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	2 cut(s)	927, 1024
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	4 cut(s)	237, 485, 823, 972
MabI	ACCWGGT	1 cut(s)	1080
MaeII	ACGT	2 cut(s)	140, 542
MaeIII	GTNAC	2 cut(s)	77, 1036
MalI	GATC	2 cut(s)	929, 1026
MboI	GATC	2 cut(s)	927, 1024
MboII	GAAGA	8 cut(s)	4, 113, 116, 121, 299, 584, 606, 1053
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	6 cut(s)	34, 367, 470, 515, 620, 707
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	459, 668, 729
MslI	CAYNNNNRTG	2 cut(s)	990, 1020
MspI	CCGG	5 cut(s)	41, 68, 841, 910, 1034
MspR9I	CCNGG	3 cut(s)	771, 911, 1082
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	2 cut(s)	771, 1082
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	73, 413, 1054
NciI	CCSGG	1 cut(s)	911
NcoI	CCATGG	1 cut(s)	1015
NdeII	GATC	2 cut(s)	927, 1024
NlaIII	CATG	5 cut(s)	287, 488, 683, 885, 1019
NmuCI	GTSAC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	1052
OliI	CACNNNNGTG	1 cut(s)	990
PaeR7I	CTCGAG	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	679
PctI	GAATGC	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	9, 892
PflMI	CCANNNNNTGG	1 cut(s)	362
PinAI	ACCGGT	1 cut(s)	840
PkrI	GCNGC	2 cut(s)	46, 256
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	769, 1080
PspGI	CCWGG	2 cut(s)	769, 1080
PspXI	VCTCGAGB	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	908
RsaNI	GTAC	1 cut(s)	907
RseI	CAYNNNNRTG	2 cut(s)	990, 1020
SaqAI	TTAA	3 cut(s)	459, 668, 729
SatI	GCNGC	2 cut(s)	45, 255
Sau3AI	GATC	2 cut(s)	927, 1024
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	3 cut(s)	771, 911, 1082
SduI	GDGCHC	1 cut(s)	346
SexAI	ACCWGGT	1 cut(s)	1080
SfaNI	GCATC	4 cut(s)	237, 485, 823, 972
SfcI	CTRYAG	1 cut(s)	717
Sfr274I	CTCGAG	1 cut(s)	1043
SfuI	TTCGAA	1 cut(s)	1052
SlaI	CTCGAG	1 cut(s)	1043
SmiMI	CAYNNNNRTG	2 cut(s)	990, 1020
SmlI	CTYRAG	2 cut(s)	349, 1043
SmoI	CTYRAG	2 cut(s)	349, 1043
SnaBI	TACGTA	1 cut(s)	543
Sse9I	AATT	6 cut(s)	34, 367, 470, 515, 620, 707
SsiI	CCGC	4 cut(s)	44, 392, 647, 762
StyD4I	CCNGG	3 cut(s)	769, 909, 1080
StyI	CCWWGG	1 cut(s)	1015
TaaI	ACNGT	2 cut(s)	965, 989
TaiI	ACGT	2 cut(s)	143, 545
TaqI	TCGA	5 cut(s)	398, 445, 930, 1044, 1052
TasI	AATT	6 cut(s)	34, 367, 470, 515, 620, 707
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	9, 892
Tru1I	TTAA	3 cut(s)	459, 668, 729
Tru9I	TTAA	3 cut(s)	459, 668, 729
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	4 cut(s)	17, 300, 501, 585
TspGWI	ACGGA	2 cut(s)	96, 102
Van91I	CCANNNNNTGG	1 cut(s)	362
XapI	RAATTY	4 cut(s)	34, 515, 620, 707
XhoI	CTCGAG	1 cut(s)	1043
XmnI	GAANNNNTTC	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.