Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

8994397 .. 8999044

Gene Structure 4648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG120600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAACGTTTCTTTCAACCAGTAGAGAAAGATGGGTCTGCCAAAAAACCCAACCTTTCATCTCCCAAAAATGGAGAAACTTCAACGGAGGACAAACCCAAGAAAGAGCCAACCAAGTTCTTAACTTGGAATGCCAACAGCTTTCTTCTTCGGATCAAGAACAACTGGCCTGAGTTTACTAAGTTCATAACCACCTTTGATCCCGATGTCATTGTGATACAGGAAGTTAGGATGCCTGCTGCTGGTTCAAAGGGTGCACCTAAACGCCCAGGAGAGTTGAAAGATGACACTAGCTCATCACGTGAAGAAAAGCAGATAATAATGCGTGCCCTGTCAAATCCACCCTTTGGAGATTATCGTGTTTGGTGGTCTCTTTCAGATTCAAAGTATGCAGGGACTGCATTGATTGTAAAGAAGTGTTTCCAACCCCAAAAAGTATTTTTCAATCTTGACAGAAAAGCTTCGAAGCATGAACCAGATGGTCGGGTTATCTTAGCTGAATTTGAGACATTTCAATTGTTGAATACATATGCACCAAACAATGGCTGGAAGGAGGAAGAAAACTCATTCCCAAGGAGAAGAAAATGGGATAAAAGGATTTTAGAGTTTGTCTTGCAATGTTCAGATAAGCCTCTCATATGGTGTGGTGATCTGAATGTCAGCCATGAAGAGATCGATGTGAGTCATCCAGATTTTTTCAGTGCAGCAAAGGTTAATGGTTATGTTCCTCCAAATAAAGAGGATTGTGGACAGCCTGGATTTACCTTGTCTGAGAGAAAGCGTTTTGGAAACATATTGAAAGAGTATGTTACCCATAACTTATTAACTTGTTCCTTTTGCATTCTTACATTGTGTGCCTGCATGGCCTCATTTATATCTATTTCACATAGAGGGAGGAAGGGAGGGGATTGGATAAGGAATATCACAGCAATAGTTGAATTTATATTATTTATTAAAAGGAGCTTTTCATTTATTTACTTAGTGCAGTTGTATTGTTACTTTCATAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

337

Amino Acids

38.94

Weight (kDa)

9.13

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	41 - 233	1e-13	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	347, 542
AclI	AACGTT	1 cut(s)	7
AclWI	GGATC	2 cut(s)	161, 194
AcsI	RAATTY	2 cut(s)	500, 938
AcvI	CACGTG	1 cut(s)	302
AfiI	CCNNNNNNNGG	4 cut(s)	71, 242, 347, 542
AjnI	CCWGG	2 cut(s)	268, 754
AluBI	AGCT	5 cut(s)	141, 294, 461, 497, 963
AluI	AGCT	5 cut(s)	141, 294, 461, 497, 963
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	2 cut(s)	375, 500
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	161, 194
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	167, 864
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	239, 704
ApoI	RAATTY	2 cut(s)	500, 938
Asp700I	GAANNNNTTC	3 cut(s)	8, 419, 460
AsuHPI	GGTGA	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	464
BaeGI	GKGCMC	2 cut(s)	259, 331
BbrPI	CACGTG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	226, 716
BccI	CCATC	2 cut(s)	26, 473
BciT130I	CCWGG	2 cut(s)	270, 756
BcoDI	GTCTC	2 cut(s)	375, 500
BfaI	CTAG	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	863
BisI	GCNGC	2 cut(s)	240, 705
BlsI	GCNGC	2 cut(s)	241, 706
Bme1390I	CCNGG	2 cut(s)	270, 756
BmrFI	CCNGG	2 cut(s)	270, 756
BmsI	GCATC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	268, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 242, 347, 542
Bse1I	ACTGG	2 cut(s)	20, 170
Bse3DI	GCAATG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	270, 756
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	268, 572
BseGI	GGATG	2 cut(s)	237, 685
BseLI	CCNNNNNNNGG	4 cut(s)	71, 242, 347, 542
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	162, 762
BseNI	ACTGG	2 cut(s)	20, 170
BseSI	GKGCMC	2 cut(s)	259, 331
BseXI	GCAGC	2 cut(s)	226, 716
BsgI	GTGCAG	2 cut(s)	723, 1004
BshFI	GGCC	2 cut(s)	169, 866
BshVI	ATCGAT	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	4 cut(s)	71, 242, 347, 542
BsmAI	GTCTC	2 cut(s)	375, 500
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	2 cut(s)	136, 840
BsnI	GGCC	2 cut(s)	169, 866
Bso31I	GGTCTC	1 cut(s)	375
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	259, 331
Bsp143I	GATC	4 cut(s)	153, 199, 649, 672
BspANI	GGCC	2 cut(s)	169, 866
BspCNI	CTCAG	2 cut(s)	163, 763
BspDI	ATCGAT	1 cut(s)	675
BspPI	GGATC	2 cut(s)	161, 194
BspT104I	TTCGAA	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	20, 170
BssECI	CCNNGG	2 cut(s)	268, 572
BssMI	GATC	4 cut(s)	153, 199, 649, 672
BssT1I	CCWWGG	1 cut(s)	572
Bst2UI	CCWGG	2 cut(s)	270, 756
Bst6I	CTCTTC	1 cut(s)	663
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	237, 327, 859
BstDEI	CTNAG	5 cut(s)	171, 180, 493, 771, 979
BstF5I	GGATG	2 cut(s)	237, 685
BstKTI	GATC	4 cut(s)	156, 202, 652, 675
BstMAI	GTCTC	2 cut(s)	375, 500
BstMBI	GATC	4 cut(s)	153, 199, 649, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 863
BstNI	CCWGG	2 cut(s)	270, 756
BstSCI	CCNGG	2 cut(s)	268, 754
BstSLI	GKGCMC	2 cut(s)	259, 331
BstV1I	GCAGC	2 cut(s)	226, 716
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	169, 866
BsuTUI	ATCGAT	1 cut(s)	675
BtsCI	GGATG	2 cut(s)	237, 685
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	237, 327, 859
CaiI	CAGNNNCTG	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	675
CviAII	CATG	3 cut(s)	470, 665, 862
DdeI	CTNAG	5 cut(s)	171, 180, 493, 771, 979
DpnI	GATC	4 cut(s)	155, 201, 651, 674
DpnII	GATC	4 cut(s)	153, 199, 649, 672
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco130I	CCWWGG	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	375
Eco72I	CACGTG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	268, 754
EcoT14I	CCWWGG	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	3 cut(s)	473, 668, 865
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	469, 664, 861
FauNDI	CATATG	2 cut(s)	529, 638
Fnu4HI	GCNGC	2 cut(s)	240, 705
FokI	GGATG	2 cut(s)	244, 672
Fsp4HI	GCNGC	2 cut(s)	240, 705
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	240, 705
HaeIII	GGCC	2 cut(s)	169, 866
Hin1II	CATG	3 cut(s)	473, 668, 865
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	2 cut(s)	380, 682
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	3 cut(s)	177, 257, 749
Hpy188I	TCNGA	5 cut(s)	153, 379, 625, 654, 772
Hpy188III	TCNNGA	4 cut(s)	157, 203, 449, 689
Hpy8I	GTNNAC	3 cut(s)	177, 257, 749
HpyAV	CCTTC	2 cut(s)	544, 892
HpyCH4IV	ACGT	2 cut(s)	7, 301
HpyCH4V	TGCA	9 cut(s)	257, 392, 401, 533, 616, 704, 840, 861, 985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 863
HpyF3I	CTNAG	5 cut(s)	171, 180, 493, 771, 979
HpySE526I	ACGT	2 cut(s)	7, 301
Hsp92II	CATG	3 cut(s)	473, 668, 865
Kzo9I	GATC	4 cut(s)	153, 199, 649, 672
LmnI	GCTCC	1 cut(s)	960
Lsp1109I	GCAGC	2 cut(s)	226, 716
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	7, 301
MaeIII	GTNAC	2 cut(s)	808, 995
MalI	GATC	4 cut(s)	155, 201, 651, 674
MboI	GATC	4 cut(s)	153, 199, 649, 672
MboII	GAAGA	6 cut(s)	137, 140, 317, 569, 591, 680
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	259, 331
MluCI	AATT	3 cut(s)	500, 515, 938
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	9 cut(s)	82, 547, 642, 733, 738, 877, 884, 888, 896
MroXI	GAANNNNTTC	3 cut(s)	8, 419, 460
MseI	TTAA	4 cut(s)	122, 714, 824, 954
MspR9I	CCNGG	2 cut(s)	270, 756
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	2 cut(s)	136, 840
MvaI	CCWGG	2 cut(s)	270, 756
MwoI	GCNNNNNNNGC	2 cut(s)	398, 863
NdeI	CATATG	2 cut(s)	529, 638
NdeII	GATC	4 cut(s)	153, 199, 649, 672
NlaIII	CATG	3 cut(s)	473, 668, 865
NspV	TTCGAA	1 cut(s)	464
PctI	GAATGC	2 cut(s)	136, 840
PdmI	GAANNNNTTC	3 cut(s)	8, 419, 460
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	2 cut(s)	347, 542
PkrI	GCNGC	2 cut(s)	241, 706
PleI	GAGTC	1 cut(s)	690
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	690
Ppu21I	YACGTR	1 cut(s)	302
Psp1406I	AACGTT	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	268, 754
PspCI	CACGTG	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	268, 754
PstNI	CAGNNNCTG	1 cut(s)	398
SaqAI	TTAA	4 cut(s)	122, 714, 824, 954
SatI	GCNGC	2 cut(s)	240, 705
Sau3AI	GATC	4 cut(s)	153, 199, 649, 672
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	2 cut(s)	270, 756
SduI	GDGCHC	2 cut(s)	259, 331
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	464
Sse9I	AATT	3 cut(s)	500, 515, 938
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	268, 754
StyI	CCWWGG	1 cut(s)	572
TaiI	ACGT	2 cut(s)	10, 304
TaqI	TCGA	2 cut(s)	464, 675
TasI	AATT	3 cut(s)	500, 515, 938
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	122, 714, 824, 954
Tru9I	TTAA	4 cut(s)	122, 714, 824, 954
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	2 cut(s)	239, 704
TspDTI	ATGAA	7 cut(s)	17, 48, 175, 486, 681, 957, 992
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	2 cut(s)	347, 542
VneI	GTGCAC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	500, 938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmnI	GAANNNNTTC	3 cut(s)	8, 419, 460
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.