DNA-(apurinic or apyrimidinic site)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48425 |
| fragaria_vesca | FvH4_5g07080 FvH4_5g07080 FvH4_5g07080 |
| malus_domestica | MD14G1165700.v1.1 |
| prunus_persica | Prupe.5G159400_v2.0.a1 |
| pyrus_communis | pycom14g13820 |
| rosa_chinensis | RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471 |
| rosa_laevigata | RLG00000004446 |
| rosa_multiflora | Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001 |
| rosa_roxburghii | Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680 |
| rosa_rugosa | Rorug05G0345200 Rorug06G0510500 |
| rosa_samantha | Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500 |
| rosa_wichuraiana | Rw2G044070 Rw7G026230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AgsI | TTSAA | 1 cut(s) | 271 |
| AjnI | CCWGG | 2 cut(s) | 226, 338 |
| AluBI | AGCT | 1 cut(s) | 283 |
| AluI | AGCT | 1 cut(s) | 283 |
| ApeKI | GCWGC | 1 cut(s) | 176 |
| AsuHPI | GGTGA | 1 cut(s) | 131 |
| BbvI | GCAGC | 1 cut(s) | 188 |
| BciT130I | CCWGG | 2 cut(s) | 228, 340 |
| BisI | GCNGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 2 cut(s) | 228, 340 |
| BmrFI | CCNGG | 2 cut(s) | 228, 340 |
| BmsI | GCATC | 1 cut(s) | 280 |
| Bsa29I | ATCGAT | 1 cut(s) | 147 |
| BsaJI | CCNNGG | 1 cut(s) | 43 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse3DI | GCAATG | 1 cut(s) | 95 |
| BseBI | CCWGG | 2 cut(s) | 228, 340 |
| BseCI | ATCGAT | 1 cut(s) | 147 |
| BseDI | CCNNGG | 1 cut(s) | 43 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseMI | GCAATG | 1 cut(s) | 95 |
| BseMII | CTCAG | 1 cut(s) | 234 |
| BseXI | GCAGC | 1 cut(s) | 188 |
| BsgI | GTGCAG | 1 cut(s) | 195 |
| BshVI | ATCGAT | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bsp143I | GATC | 2 cut(s) | 121, 144 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspDI | ATCGAT | 1 cut(s) | 147 |
| BsrDI | GCAATG | 1 cut(s) | 95 |
| BssECI | CCNNGG | 1 cut(s) | 43 |
| BssMI | GATC | 2 cut(s) | 121, 144 |
| BssT1I | CCWWGG | 1 cut(s) | 43 |
| Bst2UI | CCWGG | 2 cut(s) | 228, 340 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstKTI | GATC | 2 cut(s) | 124, 147 |
| BstMBI | GATC | 2 cut(s) | 121, 144 |
| BstNI | CCWGG | 2 cut(s) | 228, 340 |
| BstSCI | CCNGG | 2 cut(s) | 226, 338 |
| BstV1I | GCAGC | 1 cut(s) | 188 |
| Bsu15I | ATCGAT | 1 cut(s) | 147 |
| BsuTUI | ATCGAT | 1 cut(s) | 147 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| ClaI | ATCGAT | 1 cut(s) | 147 |
| CviAII | CATG | 2 cut(s) | 137, 322 |
| CviJI | RGCY | 6 cut(s) | 17, 103, 135, 226, 283, 333 |
| CviKI_1 | RGCY | 6 cut(s) | 17, 103, 135, 226, 283, 333 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| DpnI | GATC | 2 cut(s) | 123, 146 |
| DpnII | GATC | 2 cut(s) | 121, 144 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco130I | CCWWGG | 1 cut(s) | 43 |
| EcoRII | CCWGG | 2 cut(s) | 226, 338 |
| EcoT14I | CCWWGG | 1 cut(s) | 43 |
| EcoT22I | ATGCAT | 1 cut(s) | 295 |
| ErhI | CCWWGG | 1 cut(s) | 43 |
| FaeI | CATG | 2 cut(s) | 140, 325 |
| FaiI | YATR | 7 cut(s) | 110, 112, 138, 195, 266, 295, 323 |
| FatI | CATG | 2 cut(s) | 136, 321 |
| FauNDI | CATATG | 1 cut(s) | 110 |
| Fnu4HI | GCNGC | 1 cut(s) | 177 |
| FokI | GGATG | 1 cut(s) | 144 |
| Fsp4HI | GCNGC | 1 cut(s) | 177 |
| GluI | GCNGC | 1 cut(s) | 177 |
| Hin1II | CATG | 2 cut(s) | 140, 325 |
| HinfI | GANTC | 2 cut(s) | 154, 300 |
| HphI | GGTGA | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 126, 244 |
| Hpy188III | TCNNGA | 2 cut(s) | 161, 345 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 15, 265, 310 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 88, 176, 293 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| Hsp92II | CATG | 2 cut(s) | 140, 325 |
| Kzo9I | GATC | 2 cut(s) | 121, 144 |
| LpnPI | CCDG | 7 cut(s) | 3, 174, 213, 240, 325, 330, 352 |
| Lsp1109I | GCAGC | 1 cut(s) | 188 |
| LweI | GCATC | 1 cut(s) | 280 |
| MalI | GATC | 2 cut(s) | 123, 146 |
| MboI | GATC | 2 cut(s) | 121, 144 |
| MboII | GAAGA | 3 cut(s) | 40, 62, 152 |
| MlyI | GAGTC | 1 cut(s) | 163 |
| MnlI | CCTC | 6 cut(s) | 18, 114, 205, 210, 268, 319 |
| Mph1103I | ATGCAT | 1 cut(s) | 295 |
| MseI | TTAA | 1 cut(s) | 186 |
| MspR9I | CCNGG | 2 cut(s) | 228, 340 |
| MvaI | CCWGG | 2 cut(s) | 228, 340 |
| NdeI | CATATG | 1 cut(s) | 110 |
| NdeII | GATC | 2 cut(s) | 121, 144 |
| NlaIII | CATG | 2 cut(s) | 140, 325 |
| NsiI | ATGCAT | 1 cut(s) | 295 |
| PfeI | GAWTC | 1 cut(s) | 300 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 1 cut(s) | 178 |
| PleI | GAGTC | 1 cut(s) | 162 |
| PpsI | GAGTC | 1 cut(s) | 162 |
| Psp6I | CCWGG | 2 cut(s) | 226, 338 |
| PspGI | CCWGG | 2 cut(s) | 226, 338 |
| SaqAI | TTAA | 1 cut(s) | 186 |
| SatI | GCNGC | 1 cut(s) | 177 |
| Sau3AI | GATC | 2 cut(s) | 121, 144 |
| SchI | GAGTC | 1 cut(s) | 163 |
| ScrFI | CCNGG | 2 cut(s) | 228, 340 |
| SetI | ASST | 3 cut(s) | 186, 239, 285 |
| SfaNI | GCATC | 1 cut(s) | 280 |
| StyD4I | CCNGG | 2 cut(s) | 226, 338 |
| StyI | CCWWGG | 1 cut(s) | 43 |
| TaqI | TCGA | 1 cut(s) | 147 |
| TfiI | GAWTC | 1 cut(s) | 300 |
| Tru1I | TTAA | 1 cut(s) | 186 |
| Tru9I | TTAA | 1 cut(s) | 186 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseI | GCWGC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 1 cut(s) | 153 |
| TspRI | CASTG | 1 cut(s) | 178 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 14 |
| Zsp2I | ATGCAT | 1 cut(s) | 295 |