Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

65396134 .. 65405784

Gene Structure 9651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG487600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCATTCCCCTATATTTTAGCATCAGAGAATGATGCTATGGACAATGTTGTCAAAGATGTTGTACTTGATGAATCTGCTGGCGTGGCTCAGTGTCGCCGAAATGGCCTCCGCCCCCATCTGATGATGAGGTGCCGAATTGCCTTGGCACCTGTCGTGCTGCTCATGCTCCGTGTGTCTGCTTTACGCAACGACAGCACGGGTGAGATAGAGATTCAGGTCAACCAGCTGGATGGAGAGGGAAAGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCACCTGGTCAGGAAATCCCATTGGAAAGTATAGAGGCAAAAGGATGAGGATAGAGTTCTTCATAGCTGCAGAGCAACTCAAAGATAGGATTGTTTCATGTGAGATGCACGGCCAAGGGATGAATTACAAGGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

145

Amino Acids

16.52

Weight (kDa)

8.38

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	132, 148
AciI	CCGC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	409
AfaI	GTAC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	3 cut(s)	229, 247, 365
AluI	AGCT	3 cut(s)	229, 247, 365
AoxI	GGCC	2 cut(s)	106, 409
ApeKI	GCWGC	2 cut(s)	160, 365
AsuHPI	GGTGA	2 cut(s)	215, 292
BanI	GGYRCC	2 cut(s)	132, 148
BbvI	GCAGC	2 cut(s)	147, 352
BccI	CCATC	2 cut(s)	126, 227
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	161, 366
BlsI	GCNGC	2 cut(s)	162, 367
Bme1390I	CCNGG	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	134, 150
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	4 cut(s)	25, 32, 244, 393
BsaJI	CCNNGG	2 cut(s)	144, 412
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	144, 412
BseGI	GGATG	3 cut(s)	238, 348, 423
BseMII	CTCAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	147, 352
BshFI	GGCC	2 cut(s)	108, 411
BshNI	GGYRCC	2 cut(s)	132, 148
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	108, 411
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	108, 411
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	134, 150
BspMAI	CTGCAG	1 cut(s)	370
BspT107I	GGYRCC	2 cut(s)	132, 148
BssECI	CCNNGG	2 cut(s)	144, 412
BssT1I	CCWWGG	2 cut(s)	144, 412
Bst2UI	CCWGG	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	238, 348, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 105, 166, 195
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	147, 352
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	108, 411
BtsCI	GGATG	3 cut(s)	238, 348, 423
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	3 cut(s)	166, 286, 396
CviJI	RGCY	7 cut(s)	89, 108, 229, 247, 297, 365, 411
CviKI_1	RGCY	7 cut(s)	89, 108, 229, 247, 297, 365, 411
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	90
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	409
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	144, 412
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	144, 412
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	2 cut(s)	144, 412
FaeI	CATG	3 cut(s)	169, 289, 399
FaiI	YATR	8 cut(s)	15, 41, 167, 259, 287, 330, 362, 397
FatI	CATG	3 cut(s)	165, 285, 395
Fnu4HI	GCNGC	2 cut(s)	161, 366
FokI	GGATG	3 cut(s)	245, 355, 430
Fsp4HI	GCNGC	2 cut(s)	161, 366
GluI	GCNGC	2 cut(s)	161, 366
HaeIII	GGCC	2 cut(s)	108, 411
Hin1II	CATG	3 cut(s)	169, 289, 399
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	74, 214
HphI	GGTGA	2 cut(s)	215, 292
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	28, 123
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	257, 368, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 105, 166, 195
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	169, 289, 399
LmnI	GCTCC	2 cut(s)	174, 289
LpnPI	CCDG	8 cut(s)	66, 165, 203, 215, 239, 289, 294, 316
Lsp1109I	GCAGC	2 cut(s)	147, 352
LweI	GCATC	4 cut(s)	25, 32, 244, 393
MabI	ACCWGGT	1 cut(s)	302
MboII	GAAGA	1 cut(s)	349
MluCI	AATT	2 cut(s)	138, 421
MnlI	CCTC	5 cut(s)	119, 123, 232, 326, 339
Mph1103I	ATGCAT	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	4 cut(s)	86, 105, 166, 195
NlaIII	CATG	3 cut(s)	169, 289, 399
NlaIV	GGNNCC	2 cut(s)	134, 150
NsiI	ATGCAT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	74, 214
PkrI	GCNGC	2 cut(s)	162, 367
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	134, 150
PstI	CTGCAG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	161, 366
ScrFI	CCNGG	1 cut(s)	304
SetI	ASST	8 cut(s)	134, 154, 222, 231, 249, 305, 367, 432
SexAI	ACCWGGT	1 cut(s)	302
SfaNI	GCATC	4 cut(s)	25, 32, 244, 393
SfcI	CTRYAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	138, 421
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	2 cut(s)	144, 412
TasI	AATT	2 cut(s)	138, 421
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	74, 214
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	2 cut(s)	160, 365
TspDTI	ATGAA	4 cut(s)	87, 349, 384, 434
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.