DNA-(apurinic or apyrimidinic site)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48425 |
| fragaria_vesca | FvH4_5g07080 FvH4_5g07080 FvH4_5g07080 |
| malus_domestica | MD14G1165700.v1.1 |
| prunus_persica | Prupe.5G159400_v2.0.a1 |
| pyrus_communis | pycom14g13820 |
| rosa_chinensis | RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471 |
| rosa_laevigata | RLG00000004446 |
| rosa_multiflora | Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001 |
| rosa_roxburghii | Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680 |
| rosa_rugosa | Rorug05G0345200 Rorug06G0510500 |
| rosa_samantha | Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500 |
| rosa_wichuraiana | Rw2G044070 Rw7G026230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 17 |
| AccB1I | GGYRCC | 2 cut(s) | 17, 163 |
| AcoI | YGGCCR | 1 cut(s) | 424 |
| AfaI | GTAC | 1 cut(s) | 19 |
| AjnI | CCWGG | 1 cut(s) | 317 |
| AluBI | AGCT | 3 cut(s) | 244, 262, 380 |
| AluI | AGCT | 3 cut(s) | 244, 262, 380 |
| AoxI | GGCC | 1 cut(s) | 424 |
| ApeKI | GCWGC | 3 cut(s) | 117, 175, 380 |
| Asp718I | GGTACC | 1 cut(s) | 17 |
| AspLEI | GCGC | 1 cut(s) | 148 |
| AsuHPI | GGTGA | 2 cut(s) | 230, 307 |
| BanI | GGYRCC | 2 cut(s) | 17, 163 |
| BbvI | GCAGC | 3 cut(s) | 104, 162, 367 |
| BccI | CCATC | 2 cut(s) | 56, 242 |
| BceAI | ACGGC | 1 cut(s) | 439 |
| BciT130I | CCWGG | 1 cut(s) | 319 |
| BciVI | GTATCC | 1 cut(s) | 120 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BfmI | CTRYAG | 1 cut(s) | 381 |
| BfuI | GTATCC | 1 cut(s) | 120 |
| BisI | GCNGC | 3 cut(s) | 118, 176, 381 |
| BlsI | GCNGC | 3 cut(s) | 119, 177, 382 |
| Bme1390I | CCNGG | 1 cut(s) | 319 |
| BmiI | GGNNCC | 2 cut(s) | 19, 165 |
| BmrFI | CCNGG | 1 cut(s) | 319 |
| BmsI | GCATC | 4 cut(s) | 97, 133, 259, 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 2 cut(s) | 159, 427 |
| Bse8I | GATNNNNATC | 1 cut(s) | 108 |
| BseBI | CCWGG | 1 cut(s) | 319 |
| BseDI | CCNNGG | 2 cut(s) | 159, 427 |
| BseGI | GGATG | 4 cut(s) | 67, 253, 363, 438 |
| BseJI | GATNNNNATC | 1 cut(s) | 108 |
| BseXI | GCAGC | 3 cut(s) | 104, 162, 367 |
| BshFI | GGCC | 1 cut(s) | 426 |
| BshNI | GGYRCC | 2 cut(s) | 17, 163 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 426 |
| BspANI | GGCC | 1 cut(s) | 426 |
| BspHI | TCATGA | 1 cut(s) | 139 |
| BspLI | GGNNCC | 2 cut(s) | 19, 165 |
| BspMAI | CTGCAG | 1 cut(s) | 385 |
| BspT107I | GGYRCC | 2 cut(s) | 17, 163 |
| BssECI | CCNNGG | 2 cut(s) | 159, 427 |
| BssT1I | CCWWGG | 2 cut(s) | 159, 427 |
| Bst2UI | CCWGG | 1 cut(s) | 319 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| BstF5I | GGATG | 4 cut(s) | 67, 253, 363, 438 |
| BstHHI | GCGC | 1 cut(s) | 148 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 181, 210 |
| BstNI | CCWGG | 1 cut(s) | 319 |
| BstSCI | CCNGG | 1 cut(s) | 317 |
| BstSFI | CTRYAG | 1 cut(s) | 381 |
| BstV1I | GCAGC | 3 cut(s) | 104, 162, 367 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 28, 248 |
| BsuI | GTATCC | 1 cut(s) | 120 |
| BsuRI | GGCC | 1 cut(s) | 426 |
| BtsCI | GGATG | 4 cut(s) | 67, 253, 363, 438 |
| CciI | TCATGA | 1 cut(s) | 139 |
| CfoI | GCGC | 1 cut(s) | 148 |
| CsiI | ACCWGGT | 1 cut(s) | 317 |
| Csp6I | GTAC | 1 cut(s) | 18 |
| CviAII | CATG | 4 cut(s) | 140, 181, 301, 411 |
| CviJI | RGCY | 6 cut(s) | 32, 244, 262, 312, 380, 426 |
| CviKI_1 | RGCY | 6 cut(s) | 32, 244, 262, 312, 380, 426 |
| CviQI | GTAC | 1 cut(s) | 18 |
| EaeI | YGGCCR | 1 cut(s) | 424 |
| Eco130I | CCWWGG | 2 cut(s) | 159, 427 |
| EcoRII | CCWGG | 1 cut(s) | 317 |
| EcoT14I | CCWWGG | 2 cut(s) | 159, 427 |
| EcoT22I | ATGCAT | 1 cut(s) | 274 |
| ErhI | CCWWGG | 2 cut(s) | 159, 427 |
| FaeI | CATG | 4 cut(s) | 143, 184, 304, 414 |
| FaiI | YATR | 8 cut(s) | 35, 141, 182, 274, 302, 345, 377, 412 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 4 cut(s) | 139, 180, 300, 410 |
| Fnu4HI | GCNGC | 3 cut(s) | 118, 176, 381 |
| FokI | GGATG | 4 cut(s) | 74, 260, 370, 445 |
| Fsp4HI | GCNGC | 3 cut(s) | 118, 176, 381 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GlaI | GCGC | 1 cut(s) | 147 |
| GluI | GCNGC | 3 cut(s) | 118, 176, 381 |
| HaeIII | GGCC | 1 cut(s) | 426 |
| HhaI | GCGC | 1 cut(s) | 148 |
| Hin1II | CATG | 4 cut(s) | 143, 184, 304, 414 |
| Hin6I | GCGC | 1 cut(s) | 146 |
| HinP1I | GCGC | 1 cut(s) | 146 |
| HincII | GTYRAC | 1 cut(s) | 238 |
| HindII | GTYRAC | 1 cut(s) | 238 |
| HinfI | GANTC | 3 cut(s) | 43, 97, 229 |
| HphI | GGTGA | 2 cut(s) | 230, 307 |
| Hpy166II | GTNNAC | 1 cut(s) | 238 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 82, 101, 140, 324 |
| Hpy8I | GTNNAC | 1 cut(s) | 238 |
| HpyAV | CCTTC | 4 cut(s) | 8, 132, 144, 289 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 272, 383, 421 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 181, 210 |
| Hsp92II | CATG | 4 cut(s) | 143, 184, 304, 414 |
| HspAI | GCGC | 1 cut(s) | 146 |
| KpnI | GGTACC | 1 cut(s) | 21 |
| LmnI | GCTCC | 2 cut(s) | 189, 304 |
| Lsp1109I | GCAGC | 3 cut(s) | 104, 162, 367 |
| LweI | GCATC | 4 cut(s) | 97, 133, 259, 408 |
| MabI | ACCWGGT | 1 cut(s) | 317 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MboII | GAAGA | 1 cut(s) | 364 |
| MluCI | AATT | 2 cut(s) | 153, 436 |
| MmeI | TCCRAC | 1 cut(s) | 74 |
| MnlI | CCTC | 4 cut(s) | 123, 247, 341, 354 |
| Mph1103I | ATGCAT | 1 cut(s) | 274 |
| MspA1I | CMGCKG | 1 cut(s) | 244 |
| MspR9I | CCNGG | 1 cut(s) | 319 |
| MvaI | CCWGG | 1 cut(s) | 319 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 181, 210 |
| NlaIII | CATG | 4 cut(s) | 143, 184, 304, 414 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 165 |
| NsiI | ATGCAT | 1 cut(s) | 274 |
| PagI | TCATGA | 1 cut(s) | 139 |
| PfeI | GAWTC | 3 cut(s) | 43, 97, 229 |
| PkrI | GCNGC | 3 cut(s) | 119, 177, 382 |
| Psp6I | CCWGG | 1 cut(s) | 317 |
| PspGI | CCWGG | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 165 |
| PstI | CTGCAG | 1 cut(s) | 385 |
| PvuII | CAGCTG | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 19 |
| RsaNI | GTAC | 1 cut(s) | 18 |
| SatI | GCNGC | 3 cut(s) | 118, 176, 381 |
| ScrFI | CCNGG | 1 cut(s) | 319 |
| SetI | ASST | 9 cut(s) | 19, 136, 169, 237, 246, 264, 320, 382, 447 |
| SexAI | ACCWGGT | 1 cut(s) | 317 |
| SfaNI | GCATC | 4 cut(s) | 97, 133, 259, 408 |
| SfcI | CTRYAG | 1 cut(s) | 381 |
| Sse9I | AATT | 2 cut(s) | 153, 436 |
| SspMI | CTAG | 1 cut(s) | 47 |
| StyD4I | CCNGG | 1 cut(s) | 317 |
| StyI | CCWWGG | 2 cut(s) | 159, 427 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TasI | AATT | 2 cut(s) | 153, 436 |
| TfiI | GAWTC | 3 cut(s) | 43, 97, 229 |
| TseI | GCWGC | 3 cut(s) | 117, 175, 380 |
| TspDTI | ATGAA | 6 cut(s) | 39, 50, 114, 364, 399, 449 |
| TspGWI | ACGGA | 1 cut(s) | 176 |
| XbaI | TCTAGA | 1 cut(s) | 46 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 157 |
| XspI | CTAG | 1 cut(s) | 47 |
| Zsp2I | ATGCAT | 1 cut(s) | 274 |