Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

11829547 .. 11831813

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG139700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAATGTTGAGAAGAATTGCCTTGGCGCCTGTCGTGCTGCTCAGTGCTACGTGTGTTTGCTTTACGCAACGACAGCACGGAGAAAAAAGTGCTTCGTTCAAATACTTGGTCCGCCATCTCCGGCGCCGACAAATCTCCCGATTCTAAGGGGAAAGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCTCCTGGTCAGGAAATCCCATTGGAAAGTATAGAGGCAAAAGGATGAGGATAGACTACTTCATAGCTGCAGAGCAACTCAAAGATAGGATTGTTTCATGTGAGATGCACGGGCAAGGGATGAATTACAAGTTTGCTAATGTAAAAGTGAAGCAAAGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

123

Amino Acids

14.05

Weight (kDa)

9.78

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	26, 124
AciI	CCGC	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	27, 125
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	157, 275
AluI	AGCT	2 cut(s)	157, 275
ApeKI	GCWGC	2 cut(s)	38, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	2 cut(s)	29, 127
AspS9I	GGNCC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	26, 124
BbvI	GCAGC	2 cut(s)	25, 262
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	2 cut(s)	30, 128
BisI	GCNGC	2 cut(s)	39, 276
BlsI	GCNGC	2 cut(s)	40, 277
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	28, 126
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	154, 303
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	27, 125
BsaJI	CCNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	258, 333
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	25, 262
BshNI	GGYRCC	2 cut(s)	26, 124
BsiSI	CCGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	28, 126
BspMAI	CTGCAG	1 cut(s)	280
BspT107I	GGYRCC	2 cut(s)	26, 124
BssECI	CCNNGG	1 cut(s)	22
BssNI	GRCGYC	2 cut(s)	27, 125
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	214
BstACI	GRCGYC	2 cut(s)	27, 125
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	42, 146
BstF5I	GGATG	2 cut(s)	258, 333
BstH2I	RGCGCY	2 cut(s)	30, 128
BstHHI	GCGC	2 cut(s)	29, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 74
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	25, 262
BtsCI	GGATG	2 cut(s)	258, 333
BtsIMutI	CAGTG	1 cut(s)	50
CfoI	GCGC	2 cut(s)	29, 127
Cfr13I	GGNCC	1 cut(s)	110
CviAII	CATG	2 cut(s)	196, 306
CviJI	RGCY	3 cut(s)	157, 207, 275
CviKI_1	RGCY	3 cut(s)	157, 207, 275
DdeI	CTNAG	2 cut(s)	42, 146
DinI	GGCGCC	2 cut(s)	28, 126
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	169
EgeI	GGCGCC	2 cut(s)	28, 126
EheI	GGCGCC	2 cut(s)	28, 126
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	2 cut(s)	199, 309
FaiI	YATR	5 cut(s)	169, 197, 240, 272, 307
FatI	CATG	2 cut(s)	195, 305
Fnu4HI	GCNGC	2 cut(s)	39, 276
FokI	GGATG	2 cut(s)	265, 340
Fsp4HI	GCNGC	2 cut(s)	39, 276
GlaI	GCGC	2 cut(s)	28, 126
GluI	GCNGC	2 cut(s)	39, 276
HaeII	RGCGCY	2 cut(s)	30, 128
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	2 cut(s)	29, 127
Hin1I	GRCGYC	2 cut(s)	27, 125
Hin1II	CATG	2 cut(s)	199, 309
Hin6I	GCGC	2 cut(s)	27, 125
HinP1I	GCGC	2 cut(s)	27, 125
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	139, 219
HpyAV	CCTTC	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	167, 278, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 74
HpyF3I	CTNAG	2 cut(s)	42, 146
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	27, 125
Hsp92II	CATG	2 cut(s)	199, 309
HspAI	GCGC	2 cut(s)	27, 125
KasI	GGCGCC	2 cut(s)	26, 124
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	5 cut(s)	43, 135, 199, 204, 226
Lsp1109I	GCAGC	2 cut(s)	25, 262
LweI	GCATC	2 cut(s)	154, 303
MaeII	ACGT	1 cut(s)	51
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	2 cut(s)	16, 331
Mly113I	GGCGCC	2 cut(s)	27, 125
MnlI	CCTC	2 cut(s)	236, 249
Mph1103I	ATGCAT	1 cut(s)	169
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	35, 74
NarI	GGCGCC	2 cut(s)	27, 125
NlaIII	CATG	2 cut(s)	199, 309
NlaIV	GGNNCC	2 cut(s)	28, 126
NsiI	ATGCAT	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	40, 277
PluTI	GGCGCC	2 cut(s)	30, 128
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	28, 126
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	280
SatI	GCNGC	2 cut(s)	39, 276
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	3 cut(s)	54, 159, 277
SfaNI	GCATC	2 cut(s)	154, 303
SfcI	CTRYAG	1 cut(s)	276
SfoI	GGCGCC	2 cut(s)	28, 126
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	2 cut(s)	16, 331
SsiI	CCGC	1 cut(s)	113
SspDI	GGCGCC	2 cut(s)	26, 124
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	22
TaiI	ACGT	1 cut(s)	54
TasI	AATT	2 cut(s)	16, 331
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	2 cut(s)	38, 275
TspDTI	ATGAA	4 cut(s)	17, 259, 294, 344
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.