Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

4168071 .. 4173842

Gene Structure 5772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAAACGCTTCTTCCAACCAGTAGAGAAAGATGGGTCTGCCAAAAGACCCAACCTTTCATCACCCAAGAGTGAAGAAACTTCAATGGAGGACAAACCCAAGAGAGAGCCAACCAAGTTCTTAACTTGGAATGCCAATAGCTTTCTTCTTAGGGTCAAGAACAACTGGCCTGAGTTCACCAAGTTCATCACCACCTTTGATCCCGACGTCATTGCGATACAGGAAGTTAGGATGCCTGCTGCTGGTTCAAAGGGTGCACCTAAACGCCCAGGAGAGTTGAAAGATGACACTAGCTCATCGCGTGACGAAAAGCAGATAATAATGCGTGCCCTGTCAAATCCACCCTTTGGAGATTATCGTGTTTGGTGGTCACTTTCTGATTCAAAGTATGCAGGGACTGCATTGATTGTAAAGAAGTGTTTCCGACCACAAAAAGTATTTTTCAATCTTGACAGAAAAGCTTCGAAGCATGAACCAGATGGTCGGGTTATCTTAGCTGAATTTGAGACGTTTCAGTTATTGAATACATATGCACCAAACAATGGCTGGAAGGAGGAAGAAAACTCATTCCAAAGGAGACGAAAATGGGATAAAAGGATTTTAGAGTTTGTCTTGCACTGTTCAGAAAAGCCTCTCATATGGTGTGGTGATCTGAATGTCAGCCATGAAGAGATCGATGTTAGTCATCCAGATTTTTTCAGTGCAGCAAAGGTTAATGGTTATGTTCCTCCGAATAAAGAGGATTGTGGACAGCCTGGATTTACCTTGTCTGAGAGAAAGCGTTTTGGAAACATATTGAAAGAGGGAAAGCTAATAGATGCATACCGATTCCTCCACAAAGAGAAGGACATGGAGCATGGCTTCTCCTGGTCAGGAAATCCCATTGGAAAGTATAGAGGCAAAAGGATGAGGATAGACTATTTTGTAGTTGCAGAGCAACTCAAAGATAGGATTGTTTCATGTGAGATGCATGGGCAAGGGATTGAACTTCAAGGATTCTATGGAAGTGATCATTGTCCAGTTACCCTTGTGCTCTCAGAAGCACAACAGAGTTCTAAGGAGAGTGACTTAACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

360

Amino Acids

41.36

Weight (kDa)

8.82

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	22 - 235	1.9e-10	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB7I	CCANNNNNTGG	2 cut(s)	347, 542
AccII	CGCG	1 cut(s)	301
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	242, 347, 542
AgsI	TTSAA	9 cut(s)	84, 249, 280, 384, 445, 523, 799, 986, 992
AjnI	CCWGG	3 cut(s)	268, 754, 866
AluBI	AGCT	5 cut(s)	141, 294, 461, 497, 811
AluI	AGCT	5 cut(s)	141, 294, 461, 497, 811
Alw21I	GWGCWC	2 cut(s)	259, 1035
Alw26I	GTCTC	2 cut(s)	500, 571
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	239, 704
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	3 cut(s)	8, 419, 460
AsuHPI	GGTGA	4 cut(s)	54, 169, 181, 659
AsuII	TTCGAA	1 cut(s)	464
BaeGI	GKGCMC	2 cut(s)	259, 331
Bbv12I	GWGCWC	2 cut(s)	259, 1035
BbvI	GCAGC	2 cut(s)	226, 716
BccI	CCATC	2 cut(s)	26, 473
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	3 cut(s)	270, 756, 868
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	2 cut(s)	500, 571
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	240, 705
BlsI	GCNGC	2 cut(s)	241, 706
Bme1390I	CCNGG	3 cut(s)	270, 756, 868
BmrFI	CCNGG	3 cut(s)	270, 756, 868
BmsI	GCATC	3 cut(s)	222, 808, 957
Bpu14I	TTCGAA	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 347, 542
Bse1I	ACTGG	3 cut(s)	20, 170, 1019
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	270, 756, 868
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	3 cut(s)	237, 685, 912
BseLI	CCNNNNNNNGG	3 cut(s)	242, 347, 542
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	162, 762, 1050
BseNI	ACTGG	3 cut(s)	20, 170, 1019
BseSI	GKGCMC	2 cut(s)	259, 331
BseXI	GCAGC	2 cut(s)	226, 716
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	675
BsiHKAI	GWGCWC	2 cut(s)	259, 1035
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	242, 347, 542
BsmAI	GTCTC	2 cut(s)	500, 571
BsmBI	CGTCTC	2 cut(s)	500, 571
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	259, 331, 1035
Bsp143I	GATC	4 cut(s)	199, 649, 672, 1009
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	3 cut(s)	163, 763, 1049
BspDI	ATCGAT	1 cut(s)	675
BspFNI	CGCG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	20, 170, 1019
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	4 cut(s)	199, 649, 672, 1009
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	3 cut(s)	270, 756, 868
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	1 cut(s)	663
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	237, 327
BstDEI	CTNAG	6 cut(s)	149, 171, 493, 771, 1036, 1056
BstF5I	GGATG	3 cut(s)	237, 685, 912
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	4 cut(s)	202, 652, 675, 1012
BstMAI	GTCTC	2 cut(s)	500, 571
BstMBI	GATC	4 cut(s)	199, 649, 672, 1009
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	3 cut(s)	270, 756, 868
BstSCI	CCNGG	3 cut(s)	268, 754, 866
BstSLI	GKGCMC	2 cut(s)	259, 331
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	226, 716
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	237, 685, 912
BtsIMutI	CAGTG	2 cut(s)	616, 706
Cac8I	GCNNGC	2 cut(s)	237, 327
CaiI	CAGNNNCTG	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	675
CviAII	CATG	6 cut(s)	470, 665, 850, 857, 960, 971
DdeI	CTNAG	6 cut(s)	149, 171, 493, 771, 1036, 1056
DpnI	GATC	4 cut(s)	201, 651, 674, 1011
DpnII	GATC	4 cut(s)	199, 649, 672, 1009
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EcoRII	CCWGG	3 cut(s)	268, 754, 866
EcoT22I	ATGCAT	2 cut(s)	823, 972
Esp3I	CGTCTC	2 cut(s)	500, 571
FaeI	CATG	6 cut(s)	473, 668, 853, 860, 963, 974
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	6 cut(s)	469, 664, 849, 856, 959, 970
FauNDI	CATATG	2 cut(s)	529, 638
FbaI	TGATCA	1 cut(s)	1009
Fnu4HI	GCNGC	2 cut(s)	240, 705
FokI	GGATG	3 cut(s)	244, 672, 919
Fsp4HI	GCNGC	2 cut(s)	240, 705
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	240, 705
HaeIII	GGCC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	473, 668, 853, 860, 963, 974
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	3 cut(s)	380, 828, 996
HphI	GGTGA	4 cut(s)	54, 169, 181, 659
Hpy166II	GTNNAC	3 cut(s)	177, 257, 749
Hpy188I	TCNGA	7 cut(s)	379, 425, 625, 654, 732, 772, 1039
Hpy188III	TCNNGA	5 cut(s)	157, 203, 449, 689, 873
Hpy8I	GTNNAC	3 cut(s)	177, 257, 749
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	544, 838
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	2 cut(s)	207, 509
HpyCH4V	TGCA	9 cut(s)	257, 392, 401, 533, 616, 704, 821, 932, 970
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	6 cut(s)	149, 171, 493, 771, 1036, 1056
HpySE526I	ACGT	2 cut(s)	207, 509
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	473, 668, 853, 860, 963, 974
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	4 cut(s)	199, 649, 672, 1009
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	2 cut(s)	226, 716
LweI	GCATC	3 cut(s)	222, 808, 957
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	207, 509
MaeIII	GTNAC	4 cut(s)	302, 369, 1021, 1064
MalI	GATC	4 cut(s)	201, 651, 674, 1011
MboI	GATC	4 cut(s)	199, 649, 672, 1009
MboII	GAAGA	5 cut(s)	4, 86, 137, 569, 680
MhlI	GDGCHC	3 cut(s)	259, 331, 1035
MluCI	AATT	1 cut(s)	500
MmeI	TCCRAC	2 cut(s)	40, 448
MnlI	CCTC	9 cut(s)	82, 547, 642, 733, 738, 796, 842, 890, 903
Mph1103I	ATGCAT	2 cut(s)	823, 972
MroXI	GAANNNNTTC	3 cut(s)	8, 419, 460
MseI	TTAA	4 cut(s)	122, 714, 1070, 1078
MspR9I	CCNGG	3 cut(s)	270, 756, 868
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	3 cut(s)	270, 756, 868
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	2 cut(s)	529, 638
NdeII	GATC	4 cut(s)	199, 649, 672, 1009
NlaIII	CATG	6 cut(s)	473, 668, 853, 860, 963, 974
NmuCI	GTSAC	3 cut(s)	302, 369, 1064
NsiI	ATGCAT	2 cut(s)	823, 972
NspV	TTCGAA	1 cut(s)	464
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	3 cut(s)	8, 419, 460
PfeI	GAWTC	3 cut(s)	380, 828, 996
PflMI	CCANNNNNTGG	2 cut(s)	347, 542
PkrI	GCNGC	2 cut(s)	241, 706
Psp6I	CCWGG	3 cut(s)	268, 754, 866
PspGI	CCWGG	3 cut(s)	268, 754, 866
PstNI	CAGNNNCTG	1 cut(s)	398
SaqAI	TTAA	4 cut(s)	122, 714, 1070, 1078
SatI	GCNGC	2 cut(s)	240, 705
Sau3AI	GATC	4 cut(s)	199, 649, 672, 1009
ScrFI	CCNGG	3 cut(s)	270, 756, 868
SduI	GDGCHC	3 cut(s)	259, 331, 1035
SfaNI	GCATC	3 cut(s)	222, 808, 957
SfuI	TTCGAA	1 cut(s)	464
Sse9I	AATT	1 cut(s)	500
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	3 cut(s)	268, 754, 866
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	2 cut(s)	210, 512
TaqI	TCGA	2 cut(s)	464, 675
TasI	AATT	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	380, 828, 996
Tru1I	TTAA	4 cut(s)	122, 714, 1070, 1078
Tru9I	TTAA	4 cut(s)	122, 714, 1070, 1078
TscAI	CASTG	2 cut(s)	623, 706
TseFI	GTSAC	3 cut(s)	302, 369, 1064
TseI	GCWGC	2 cut(s)	239, 704
Tsp45I	GTSAC	3 cut(s)	302, 369, 1064
TspDTI	ATGAA	6 cut(s)	17, 48, 175, 486, 681, 948
TspRI	CASTG	2 cut(s)	623, 706
Van91I	CCANNNNNTGG	2 cut(s)	347, 542
VneI	GTGCAC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmnI	GAANNNNTTC	3 cut(s)	8, 419, 460
XspI	CTAG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	208
Zsp2I	ATGCAT	2 cut(s)	823, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.