Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

12359333 .. 12365692

Gene Structure 6360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGCCAGACAAAGAGGGACTAAGATTACTCTTCAAATGAGAATTGGCGCCATGATGAGCCATGATCTGGGAAAGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCACCTGGTCAGGAAATCCCTTTGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

52

Amino Acids

6.06

Weight (kDa)

10.27

Isoelectric Point (pI)

15.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	133
BfoI	RGCGCY	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	47
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	131
CviAII	CATG	3 cut(s)	52, 62, 115
CviJI	RGCY	4 cut(s)	5, 60, 76, 126
CviKI_1	RGCY	4 cut(s)	5, 60, 76, 126
DdeI	CTNAG	1 cut(s)	21
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	88
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
FaeI	CATG	3 cut(s)	55, 65, 118
FaiI	YATR	4 cut(s)	53, 63, 88, 116
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	51, 61, 114
GlaI	GCGC	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	55, 65, 118
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HphI	GGTGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	55, 65, 118
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	19, 53, 118, 123, 145
LweI	GCATC	1 cut(s)	73
MabI	ACCWGGT	1 cut(s)	131
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	42
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	8
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	48
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	55, 65, 118
NlaIV	GGNNCC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	2 cut(s)	78, 134
SexAI	ACCWGGT	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	49
SgeI	CNNG	9 cut(s)	18, 64, 74, 80, 127, 134, 144, 145, 150
Sse9I	AATT	1 cut(s)	42
SspDI	GGCGCC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	131
TasI	AATT	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.