Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022975.1

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 913

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022975.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 295 bp

atgaaacgtttctttcaaccagtagagaaagatgggtctgccaaaaaacccaacctttcatctcccaaaaatggagaaacttcaactgaggacaaacccaagaaagagccaaccaagttcttaacttggaatgccaacagctttcttcttcgagtcaagaacaactggcctgagtttactaagttcataaccaccttcgatcccgatgtcattgcgatacaggaagttaggatgcctgctgctggttcaaagggtgcacctaaacgcccaggagagttgaaagatgacactagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

9.6

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	7
AclWI	GGATC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	71, 242
AgsI	TTSAA	4 cut(s)	17, 84, 249, 280
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	141, 294
AluI	AGCT	2 cut(s)	141, 294
Alw21I	GWGCWC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 242
Bse1I	ACTGG	2 cut(s)	20, 170
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	71, 242
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	78, 162
BseNI	ACTGG	2 cut(s)	20, 170
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	71, 242
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	79, 163
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	20, 170
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	87, 171, 180
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	237
CviJI	RGCY	4 cut(s)	109, 141, 169, 294
CviKI_1	RGCY	4 cut(s)	109, 141, 169, 294
DdeI	CTNAG	3 cut(s)	87, 171, 180
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	268
FaiI	YATR	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	177, 257
Hpy188III	TCNNGA	2 cut(s)	157, 203
Hpy8I	GTNNAC	2 cut(s)	177, 257
HpyAV	CCTTC	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	257
HpyF3I	CTNAG	3 cut(s)	87, 171, 180
HpySE526I	ACGT	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	33, 151, 183, 206, 228, 249, 255, 282
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	7
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	137, 140
MhlI	GDGCHC	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	5 cut(s)	10, 57, 143, 197, 262
SfaNI	GCATC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	151, 198
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	17, 48, 175
VneI	GTGCAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.