Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

18262950 .. 18268980

Gene Structure 6031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAGCCTCCAAAGCTTTTATGGGTGAAAGAAAATCTGCCGAATCTTGGTCAATGGTCTTCGGTGGATGGACTTGATCCATGGCTATCCTTGATTCACTCATCAAAGTGTTTCCGCATCCGGCAATCCGGCGGTGGAGTTGCGGTGATCCAAGCTAGAGGCCTTACCATGGGTTTTGGTCAATTGAGAGGAGCCGAATCCACATGGCAGTTGGTTGACTCAAATCGGACCGGAAGTGTGAGAACGAACGAGCACGATCAACATGCGATCCTCCGATGTTGGGTTGGCAGCAAGACATGTGGCTGGATTTGTAACAATCAAATCATTCATTGGGGGAGAAAATCGAAGGAGTCGAAGTCGGAGTTGGGGGGAGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.97

Weight (kDa)

9.55

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	115, 132, 143
AclWI	GGATC	3 cut(s)	71, 142, 262
AfiI	CCNNNNNNNGG	3 cut(s)	47, 169, 280
AflIII	ACRYGT	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	2 cut(s)	16, 155
AluI	AGCT	2 cut(s)	16, 155
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	71, 142, 262
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	4, 288
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	37, 157
AvaII	GGWCC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	16, 300
BccI	CCATC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	5, 289
BlsI	GCNGC	2 cut(s)	6, 290
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	193
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	80, 168
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 169, 280
BseDI	CCNNGG	2 cut(s)	80, 168
BseGI	GGATG	2 cut(s)	73, 117
BseLI	CCNNNNNNNGG	3 cut(s)	47, 169, 280
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	16, 300
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	121, 129, 231
BslI	CCNNNNNNNGG	3 cut(s)	47, 169, 280
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	76, 147, 256, 267
Bsp19I	CCATGG	2 cut(s)	80, 168
BspACI	CCGC	3 cut(s)	115, 132, 143
BspANI	GGCC	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	71, 142, 262
BssECI	CCNNGG	2 cut(s)	80, 168
BssMI	GATC	4 cut(s)	76, 147, 256, 267
BssT1I	CCWWGG	2 cut(s)	80, 168
BstDSI	CCRYGG	2 cut(s)	80, 168
BstF5I	GGATG	2 cut(s)	73, 117
BstKTI	GATC	4 cut(s)	79, 150, 259, 270
BstMBI	GATC	4 cut(s)	76, 147, 256, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNSI	RCATGY	2 cut(s)	266, 300
BstV1I	GCAGC	2 cut(s)	16, 300
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	2 cut(s)	80, 168
BtsCI	GGATG	2 cut(s)	73, 117
Cfr13I	GGNCC	1 cut(s)	228
CpoI	CGGWCCG	1 cut(s)	228
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CspI	CGGWCCG	1 cut(s)	228
CviAII	CATG	6 cut(s)	81, 169, 204, 263, 297, 378
CviJI	RGCY	7 cut(s)	7, 16, 85, 155, 162, 194, 303
CviKI_1	RGCY	7 cut(s)	7, 16, 85, 155, 162, 194, 303
DpnI	GATC	4 cut(s)	78, 149, 258, 269
DpnII	GATC	4 cut(s)	76, 147, 256, 267
Eco130I	CCWWGG	2 cut(s)	80, 168
Eco147I	AGGCCT	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	80, 168
ErhI	CCWWGG	2 cut(s)	80, 168
FaeI	CATG	6 cut(s)	84, 172, 207, 266, 300, 381
FaiI	YATR	7 cut(s)	22, 82, 170, 205, 264, 298, 379
FatI	CATG	6 cut(s)	80, 168, 203, 262, 296, 377
Fnu4HI	GCNGC	2 cut(s)	5, 289
FokI	GGATG	2 cut(s)	80, 104
Fsp4HI	GCNGC	2 cut(s)	5, 289
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	5, 289
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	3 cut(s)	121, 129, 231
Hin1II	CATG	6 cut(s)	84, 172, 207, 266, 300, 381
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	43, 94, 197, 218, 350
HpaII	CCGG	3 cut(s)	121, 129, 231
HphI	GGTGA	2 cut(s)	37, 157
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	228, 275, 361
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
Hsp92II	CATG	6 cut(s)	84, 172, 207, 266, 300, 381
Kzo9I	GATC	4 cut(s)	76, 147, 256, 267
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	4 cut(s)	134, 142, 244, 289
Lsp1109I	GCAGC	2 cut(s)	16, 300
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	4 cut(s)	78, 149, 258, 269
MboI	GATC	4 cut(s)	76, 147, 256, 267
MboII	GAAGA	1 cut(s)	51
MfeI	CAATTG	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	212, 359
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	18, 152, 182, 281, 365
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	3 cut(s)	121, 129, 231
MunI	CAATTG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	13
NcoI	CCATGG	2 cut(s)	80, 168
NdeII	GATC	4 cut(s)	76, 147, 256, 267
NlaIII	CATG	6 cut(s)	84, 172, 207, 266, 300, 381
NlaIV	GGNNCC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	266, 300
PceI	AGGCCT	1 cut(s)	162
PciI	ACATGT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	43, 94, 197
PkrI	GCNGC	2 cut(s)	6, 290
PleI	GAGTC	2 cut(s)	212, 358
PpsI	GAGTC	2 cut(s)	212, 358
PscI	ACATGT	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	106
Rsr2I	CGGWCCG	1 cut(s)	228
RsrII	CGGWCCG	1 cut(s)	228
SatI	GCNGC	2 cut(s)	5, 289
Sau3AI	GATC	4 cut(s)	76, 147, 256, 267
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	212, 359
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	2 cut(s)	18, 157
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	3 cut(s)	115, 132, 143
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	162
StyI	CCWWGG	2 cut(s)	80, 168
TaqI	TCGA	2 cut(s)	344, 353
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	3 cut(s)	43, 94, 197
TseI	GCWGC	2 cut(s)	4, 288
TspDTI	ATGAA	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	228
XceI	RCATGY	2 cut(s)	266, 300
XcmI	CCANNNNNNNNNTGG	2 cut(s)	18, 208
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.